NDLI: Chaos Game Representation of Genomes and their Simulation by Recurrent Iterated Function Systems

Content Provider	IEEE Xplore Digital Library
Author	Zu-Guo Yu Long Shi Qian-Jun Xiao Vo Anh
Copyright Year	2008
Description	Author affiliation: Sch. of Math. & Comput. Sci., Xiangtan Univ., Xiangtan (Zu-Guo Yu; Long Shi; Qian-Jun Xiao)
Abstract	Chaos game representation (CGR) of DNA sequences and linked protein sequences from genomes was proposed by Jeffrey (Nucleic Acid Research 18 (1990) 2163-2170) and Yu et al. (J. Theor. Biol, 226 (2004) 341-348), respectively. In this paper, we consider the CGR of three kinds of sequences from complete genomes: whole genome DNA sequences, linked coding DNA sequences and linked protein sequences. Some fractal patterns are found in these CGRs. A recurrent iterated function systems (RIFS) model is proposed to simulate the CGRs of these sequences from genomes and their induced measures. Numerical results on 50 genomes show that the RIFS model can simulate very well the CGRs and their induced measures . The parameters estimated in the RIFS model reflect information on species classification .
Starting Page	41
Ending Page	46
File Size	601576
Page Count	6
File Format	PDF
ISBN	9781424417476
DOI	10.1109/ICBBE.2008.17
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2008-05-16
Publisher Place	China
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Chaos Proteins Visualization Sequences Magnetic field measurement Genomics DNA Amino acids Fractals Bioinformatics
Content Type	Text
Resource Type	Article

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