NDLI: Spike detection and sorting using PARAFAC2 method

Content Provider	IEEE Xplore Digital Library
Author	Just, T. Weis, M. Husar, P.
Copyright Year	2014
Description	Author affiliation: Inst. of Biomed. Eng. & Inf., Tech. Univ. Ilmenau, Ilmenau, Germany (Just, T.; Weis, M.; Husar, P.)
Abstract	In this contribution we introduce the Parallel Factor 2 (PARAFAC2) analysis as a novel method for the simultaneous detection and classification of neural action potentials. In order to measure these action potentials (spike signals), stem cell derived neuronal cells are cultivated on the surface of a Micro Electrode Array (MEA). Here, the neuronal cells produce ion currents, which can be measured as extracellular electric potentials. Whenever a cell or a group of cells produces ion currents, either spontaneously or evoked by a stimulus, a spike signal can be measured by the electrodes of the MEA. Stimulated cells produce spikes and groups of spikes (bursts) which propagate in space over the MEA. In the recorded data, different source types (e.g., cells which respond directly to external stimuli and cells which are triggered by other neural cells) are characterized by different spike shapes. The proposed PARAFAC2 method is able to separate these spike shapes (sources) in time, frequency and space (channels) enabling an improved performance in noisy scenarios. Furthermore, PARAFAC2 allows for a causality analysis on the measured spike signals (i.e. the identification of different signal paths). Thereby, the PARAFAC2 decomposition is able to exploit the multi-dimensional structure of the MEA data.
Sponsorship	IEEE Eng. Med. Biol. Soc.
Starting Page	5486
Ending Page	5489
File Size	660866
Page Count	4
File Format	PDF
ISBN	9781424479290
ISSN	1557170X
DOI	10.1109/EMBC.2014.6944868
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2014-08-26
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Time-frequency analysis Signal to noise ratio Sorting Electric potential Electrodes Matrix decomposition Neurons
Content Type	Text
Resource Type	Article
Subject	Signal Processing Biomedical Engineering Health Informatics Computer Vision and Pattern Recognition

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

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