NDLI: Is DNA Code Periodicity Only Due to CUF

Content Provider	IEEE Xplore Digital Library
Author	Zoltowski, M.
Copyright Year	2007
Abstract	The triplet code for proteins and functional RNA has been either from the universal pattern of ancient RNA (- HI) [1], with a key role of an uneven codon usage frequency (CUF) in the periodic patterns origination, or a reading frame monitoring device (RFMD -H2) [2- 4]. HI has lately been upheld [1] but in a single sequence sensitive way [1]. Since HI and H2 are not mutually exclusive [2, 3, 4], a single sequence-wise sensitive approach by a resonant recognition model (RRM) has become the attempt described in this paper to challenge HI and H2 in eukaryotes case as a novelty. In the RRM model [5, 6, 7] two bio-molecules interact favorably provided they both obey a common frequency and opposite phases consensus in their delocalized electron energy (DEE-) distributions [5]. Hence it has been possible to learn how well the DEE-s of the mRNA and of the ribosome match each other at 1/3 Hz - that applied to both the original and the CUF preserving randomly shuffled genomic data across the well known Burset and Guigo collection of 570 coding vertebrates' genes. The matching of RRM patterns reduces to harmonics phase comparison of the relevant DEE-s, a task by a digital phase locked loop (DPLL) [8, 9, and 10]. The DPLL phase control to meet the RRM phase matching case is quantified into a small number of classes to describe the mRNA- ribosome interaction in a categorical way. Concerning the resulting lack of RRM preferences between the original and shuffled genes codons, it is concluded that either HI is consistent with H2 or that an uneven CUF is sufficient for the gene rhythm of period 3 a single sequence wise. An application to exons recognition and perspectives are also addressed.
Starting Page	1383
Ending Page	1386
File Size	250679
Page Count	4
File Format	PDF
ISBN	9781424407873
ISSN	1557170X
DOI	10.1109/IEMBS.2007.4352556
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2007-08-22
Publisher Place	France
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	DNA Frequency Hydrogen RNA Proteins Monitoring Sequences Resonance Electrons Genomics
Content Type	Text
Resource Type	Article
Subject	Signal Processing Biomedical Engineering Health Informatics Computer Vision and Pattern Recognition

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Exons and introns characterization in nucleic acid sequences by time-frequency analysis

Robust Mixture Model Clustering of DNA Binding Sites

MR-guidance of HIFU therapy

Insight into DNA periodicity by a single-channel sequence data approach

Transcription factor binding site detection through position cross-mutual information variability analysis

A new approach to revealing functional residues from analysis of protein primary structure

Using Suffix Tree to Discover Complex Repetitive Patterns in DNA Sequences

Detection of RNAP-DNA complexes using solid state nanopores

Detection of palindromes in DNA sequences using periodicity transform

Is DNA Code Periodicity Only Due to CUF - Codons Usage Frequency?

Similar Documents

Exons and introns characterization in nucleic acid sequences by time-frequency analysis

Robust Mixture Model Clustering of DNA Binding Sites

MR-guidance of HIFU therapy

Insight into DNA periodicity by a single-channel sequence data approach

Transcription factor binding site detection through position cross-mutual information variability analysis

A new approach to revealing functional residues from analysis of protein primary structure

Using Suffix Tree to Discover Complex Repetitive Patterns in DNA Sequences

Detection of RNAP-DNA complexes using solid state nanopores

Detection of palindromes in DNA sequences using periodicity transform

Is DNA Code Periodicity Only Due to CUF - Codons Usage Frequency?