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| Content Provider | World Health Organization (WHO)-Global Index Medicus |
|---|---|
| Author | Wang, W. H. Lei, J. L. Huang, X. Y. Tao, P. Yue, Z. C. Li, B. Y. Zhong, X. M. |
| Description | Country affiliation: China Author Affiliation: Huang XY ( Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.); Tao P ( Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.); Li BY ( Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.); Wang WH ( Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.); Yue ZC ( Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.); Lei JL ( Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China.); Zhong XM ( Institute of Vegetables, Zhejiang Academy of Agricultural Sciences, Hangzhou, China zxmlly@hotmail.com.) |
| Abstract | Chinese cabbage (Brassica rapa ssp. pekinensis) is one of the most important vegetable crops grown worldwide, and various methods exist for selection, propagation, and cultivation. The entire Chinese cabbage genome has been sequenced, and the heat shock transcription factor family (Hsfs) has been found to play a central role in plant growth and development and in the response to biotic and abiotic stress conditions, particularly in acquired thermotolerance. We analyzed heat tolerance mechanisms in Chinese cabbage. In this study, 30 Hsfs were identified from the Chinese cabbage genome database. The classification, phylogenetic reconstruction, chromosome distribution, conserved motifs, expression analysis, and interaction networks of the Hsfs were predicted and analyzed. Thirty BrHsfs were classified into 3 major classes (class A, B, and C) according to their structural characteristics and phylogenetic comparisons, and class A was further subdivided into 8 subclasses. Distribution mapping results showed that Hsf genes were located on 10 Chinese cabbage chromosomes. The expression profile indicated that Hsfs play differential roles in 5 organs in Chinese cabbage, and likely participate in the development of underground parts and regulation of reproductive growth. An orthologous gene interaction network was constructed, and included MBF1C, ROF1, TBP2, CDC2, and HSP70 5 genes, which are closely related to heat stress. Our results contribute to the understanding of the complexity of Hsfs in Chinese cabbage and provide a basis for further functional gene research. |
| e-ISSN | 16765680 |
| Journal | Genetics and Molecular Research |
| Issue Number | 1 |
| Volume Number | 14 |
| Language | English |
| Publisher | Fundação de Pesquisas Científicas de Ribeirão Preto |
| Publisher Date | 2015-03-27 |
| Publisher Place | Brazil |
| Access Restriction | Open |
| Subject Keyword | Brassica Rapa Genetics Dna-binding Proteins Transcription Factors Metabolism Chromosome Mapping Biosynthesis Isolation & Purification Phylogeny Sequence Analysis, Protein Stress, Physiological Research Support, Non-u.s. Gov't Discipline Genetics Discipline Molecular Biology Discipline Bioinformatics |
| Content Type | Text |
| Resource Type | Article |
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