NDLI: Automatic tracking and analysis system for free-swimming bacteria

Content Provider	IEEE Xplore Digital Library
Author	Taboada, B. Poggio, S. Camarena, L. Corkidi, G.
Copyright Year	2003
Description	Author affiliation: Centro de Ciencias Aplicadas y Desarrollo, Mexico D.F., Mexico (Taboada, B.)
Abstract	Bacterial swimming is mediated by flagella. The rotary activity of this organelle is controlled by a signal transduction pathway which integrates several stimuli from the surrounding environment. The study of the flagellar rotary motor and the transduction pathway system associated with its control frequently requires the analysis of the swimming behavior of several hundred independent cells. Simple eye analysis of such large numbers of bacteria is difficult and tedious. Automated specific purpose commercial tracking systems may be expensive or locked for extended user developments. In this paper, we describe an automatic basic bacteria tracking method which can be easily implemented by using a general-purpose image analyzer. The method obtains dynamic information of free-swimming bacteria from a recorded digital video film. The tracking system reconstructs simultaneously the trajectories of all cell bodies in the film by matching its center of mass from frame-to-frame, resulting in individual cell paths. Dynamic information of the bacterial swimming behavior is obtained: average run speed, maximum and minimal speed, total average speed, average run time, average stop time, stop frequency, interval moving frequency and the distributions of runs, stops, speeds, distances and accelerations. An average correlation factor of 0.99 has been obtained for manual and automated results.
Sponsorship	Whitaker Found
Starting Page	906
Ending Page	909
File Size	423768
Page Count	4
File Format	PDF
ISBN	0780377893
ISSN	1094687X
DOI	10.1109/IEMBS.2003.1279912
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2003-09-17
Publisher Place	Mexico
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Microorganisms Frequency Image reconstruction Microscopy Circuits Image analysis Aerodynamics Trajectory Automatic control Control systems
Content Type	Text
Resource Type	Article

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Automatic tracking of swimming microorganisms in 4D digital in-line holography data

Study of flatness-based Automatic Generation Control Approach on an NPCC system model

Automatic tracking of swimming microorganisms in 4d digital in-line holography data.

Three-dimensional image acquisition system for multi-sperm tracking

Analysis of viral surfing based on fluorescence microscopy imaging and automatic tracking

On-line tracking and stimulation of swimming microorganism by on-chip microrobot

Tracking swimmers bacteria and pores within a biofilm

Tracking control of vehicles using nonlinear model

AM-FM Demodulation Methods for Reconstruction, Analysis and Motion Estimation in Video signals

Automatic tracking and analysis system for free-swimming bacteria

Similar Documents

Automatic tracking of swimming microorganisms in 4D digital in-line holography data

Study of flatness-based Automatic Generation Control Approach on an NPCC system model

Automatic tracking of swimming microorganisms in 4d digital in-line holography data.

Three-dimensional image acquisition system for multi-sperm tracking

Analysis of viral surfing based on fluorescence microscopy imaging and automatic tracking

On-line tracking and stimulation of swimming microorganism by on-chip microrobot

Tracking swimmers bacteria and pores within a biofilm

Tracking control of vehicles using nonlinear model

AM-FM Demodulation Methods for Reconstruction, Analysis and Motion Estimation in Video signals

Automatic tracking and analysis system for free-swimming bacteria