NDLI: Calculation of evolutionary trees from sequence data.

Please wait, while we are loading the content...

Year: 2017 Volume: 114

Year: 2016 Volume: 113

Year: 2015 Volume: 112

Year: 2014 Volume: 111

Year: 2013 Volume: 110

Year: 2012 Volume: 109

Year: 2011 Volume: 108

Year: 2010 Volume: 107

Year: 2009 Volume: 106

Year: 2008 Volume: 105

Year: 2007 Volume: 104

Year: 2006 Volume: 103

Year: 2005 Volume: 102

Year: 2004 Volume: 101

Year: 2003 Volume: 100

Year: 2002 Volume: 99

Year: 2001 Volume: 98

Year: 2000 Volume: 97

Year: 1999 Volume: 96

Year: 1998 Volume: 95

Year: 1997 Volume: 94

Year: 1996 Volume: 93

Year: 1995 Volume: 92

Year: 1994 Volume: 91

Year: 1993 Volume: 90

Year: 1992 Volume: 89

Year: 1991 Volume: 88

Year: 1990 Volume: 87

Year: 1989 Volume: 86

Year: 1988 Volume: 85

Year: 1987 Volume: 84

Year: 1986 Volume: 83

Year: 1985 Volume: 82

Year: 1984 Volume: 81

Year: 1983 Volume: 80

Year: 1982 Volume: 79

Year: 1981 Volume: 78

Year: 1980 Volume: 77

Year: 1979 Volume: 76

Year: 1979 Volume: 76 Issue: 12

Year: 1979 Volume: 76 Issue: 11

Year: 1979 Volume: 76 Issue: 10

Year: 1979 Volume: 76 Issue: 9

Photoelectric properties and detection of the aromatic carcinogens benza[a]pyrene and dimethylbenzanthracene.

Identification of mannose 6-phosphate in glycoproteins that inhibit the assimilation of β-galactosidase by fibroblasts

Cloning immunoglobulin gamma 2b chain gene of mouse: characterization and partial sequence determination.

Promoter mutations in the transfer RNA gene tyrT of Escherichia coli.

Passive modulation of blood-group antigens.

Immunoglobulin differentiation is dictated by repeated recombination sequences within the V region prototype gene: a hypothesis.

Some sequence similarities among cloned mouse DNA segments that code for lambda and kappa light chains of immunoglobulins.

Cloned pairs of variable region genes for immunoglobulin heavy chains isolated from a clone library of the entire mouse genome.

Cloning of the structural gene (ompA) for an integral outer membrane protein of Escherichia coli K-12.

Cloning of integrated Moloney sarcoma proviral DNA sequences in bacteriophage lambda.

Isolation of glycosaminoglycans (heparan sulfate) from glomerular basement membranes.

Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences.

Transcription promotes recA-independent recombination mediated by DNA-dependent RNA polymerase in Escherichia coli.

Sigma subunit of Escherichia coli RNA polymerase affects the function of lambda N gene.

Bacterial lipopolysaccharide activates suppressor B lymphocytes.

Photoaffinity labeling of cyclic-AMP- and AMP-binding proteins differentiating Dictyostelium discoideum cells.

Enzymatic methyl esterification of specific glutamyl residue in corticotropin.

Characterization of a histone-like protein extracted from yeast mitochondria.

Oncogenicity of simian virus 40 deletion mutants that induce altered 17-kilodalton t-proteins.

A general priming system employing only dnaB protein and primase for DNA replication.

Splicing as a requirement for biogenesis of functional 16S mRNA of simian virus 40.

Conserved primary sequences of the DNA terminal proteins of five different human adenovirus groups.

DNA synthesis in temperature-sensitive mutants of the cell cycle infected by polyoma virus and adenovirus.

Phospholipid methylation stimulates lactogenic binding in mouse mammary gland membranes.

Molecular genetics of herpes simplex virus: the terminal a sequences of the L and S components are obligatorily identical and constitute a part of a structural gene mapping predominantly in the S component.

Identification of DNA fragments carrying ecotropic proviruses of AKR mice.

Catabolite inactivation of gluconeogenic enzymes in mutants of yeast deficient in proteinase B.

Selective and unidirectional membrane redistribution of an H-2 antigen with an antibody-clustered viral antigen: relationship to mechanisms of cytotoxic T-cell interactions.

Sodium transport inhibitor from bovine hypothalamus.

Endogenous digitalis-like activity in mammalian brain.

1H nuclear magnetic resonance investigation of flexibility in DNA.

Antibodies bound to lipid haptens in model membranes diffuse as rapidly as the lipids themselves.

Characterization of an endopeptidase involved in pre-protein processing.

Enhanced nonenzymatic glucosylation of human serum albumin in diabetes mellitus.

Synthesis of fluorescent nucleotide analogues: 5'-mono-, di-, and triphosphates of linear-benzoguanosine, linear-benzoinosine, and linear-benzoxanthosine.

Differential activities of glycolipid glycosyltransferases in Tay-Sachs disease: studies in cultured cells from cerebrum.

Mechanism for circularization of linear DNAs: circular parvovirus MVM DNA is formed by a 'noose' sliding in a 'lasso'-like DNA structure.

Structure of genes for human growth hormone and chorionic somatomammotropin.

Enzymatic identification of mannose 6-phosphate on the recognition marker for receptor-mediated pinocytosis of beta-glucuronidase by human fibroblasts.

Identification of gamma-glutamyl phosphate in the alpha 2 chains of chicken bone collagen.

Comparison of adult, embryonic, and dystrophic myosin heavy chains from chicken muscle by sodium dodecyl sulfate/polyacrylamide gel electrophoresis and peptide mapping.

Eukaryotic mRNA cap binding protein: purification by affinity chromatography on sepharose-coupled m7GDP.

Construction and cloning of rat albumin structural gene sequences.

Characterization and regulation of reductase kinase, a protein kinase that modulates the enzymic activity of 3-hydroxy-3-methylglutaryl-coenzyme A reductase

Orientation of rhodopsin alpha-helices in in retinal rod outer segment membranes studied by infrared linear dichroism.

Protein-heme interaction in hemoglobin: evidence from Raman difference spectroscopy.

Filament interaction in intact muscle fibers monitored by light scattering.

Synthesis of labile, serum-dependent protein in early G1 controls animal cell growth.

Presence and expression of Friend erythroleukemia virus-related sequences in normal and leukemic mouse tissues.

Acute stimulation of aromatization in Leydig cells by human chorionic gonadotropin in vitro.

Regulation of translational initiation ina temperature-sensitive mutant of BHK cells.

Stimulation of phospholipid metabolism in embryonic muscle cells treated with phospholipase C.

Isolation of a high molecular weight actin-binding protein from baby hamster kidney (BHK-21) cells.

Fluorescent phallotoxin, a tool for the visualization of cellular actin.

Biological detection of specific mRNA molecules by microinjection.

Murine erythroleukemia cell differentiation: relationship of globin gene expression and of prolongation of G1 to inducer effects during G1/early S.

Calculation of evolutionary trees from sequence data.

Polymorphism and loss of duplicate gene expression: a theoretical study with application of tetraploid fish.

Cytoplasmic inheritance of erythromycin resistance in human cells.

Regulation of the tissue specificity of an enzyme by a cis-acting genetic element: evidence from interspecific Drosophila hybrids.

DNA restriction endonuclease analysis for localization of human beta- and delta-globin genes on chromosome 11.

Telomere replication, kinetochore organizers, and satellite DNA evolution.

Cell cytotoxicity due to specific influenza antibody production in vitro after recent influenza antigen stimulation.

Nicotinic acetylcholine receptor: evidence for a functionally distinct receptor on human lymphocytes.

Studies on murine Ss protein: demonstration that S region encodes structural gene for fourth component of complement.

Apolipoproteins in human cerebrospinal fluid.

Cholesterol homeostasis in the rat with a portacaval anastomosis.

Restriction endonuclease cleavage map and location of unique features of the DNA of hepatitis B virus, subtype adw2.

Regulation of the state of phosphorylation of specific neuronal proteins in mouse brain by in vivo administration of anesthetic and convulsant agents.

Target recognition in neurogenesis: formation of the Mauthner axon cap.

Localization of spontaneously hyperactive B cells of NZB mice to a specific B cell subset.

Monoclonal antibody directed to a B-cell antigen present in rats, mice, and humans.

'Hybrid' synapses formed by foreign innervation of parasympathetic neurons: a model for selectivity during competitive reinnervation.

Differences in mutagenicity and cytotoxicity of (+)- and (-)-benzo[a]pyrene 4,5-oxide: a synergistic interaction of enantiomers.

Yeast chromatin is uniformly digested by DNase-I.

Electrophoretic transfer of proteins from polyacrylamide gels to nitrocellulose sheets: procedure and some applications.

Energy-dependent processing of cytoplasmically made precursors to mitochondrial proteins.

Subunit structure of dihydrolipoyl transacetylase component of pyruvate dehydrogenase complex from Escherichia coli.

Accessibility of guanine at position 44 in the invariant sequence 5'CCG44AAC3' of Escherichia coli 5S RNA to reaction with kethoxal.

On the evolution of accuracy and cost of proofreading tRNA aminoacylation.

Genetics of type II glycogenosis: assignment of the human gene for acid alpha-glucosidase to chromosome 17.

Activation of mating type genes by transposition in Saccharomyces cerevisiae.

Evidence that a single DNA ligase is involved in replication and recombination in yeast.

Enhanced mitotic recombination in a ligase-defective mutant of the yeast Saccharomyces cerevisiae.

Characterization of a protein correlated with the production of knob-like protrusions on membranes of erythrocytes infected with Plasmodium falciparum

pH-dependent migration of copper(II) to the vacant zinc-binding site of zinc-free bovine erythrocyte superoxide dismutase

Leukotriene C: a slow-reacting substance from murine mastocytoma cells.

Hydroperoxides can modulate the redox state of pyridine nucleotides and the calcium balance in rat liver mitochondria

Involvement of long-chain acyl coenzyme A for lipid synthesis in repression of acetyl-coenzyme A carboxylase in Candida lipolytica.

A new glnA-linked regulatory gene for glutamine synthetase in Escherichia coli.

Nitrogen control in Salmonella: regulation by the glnR and glnF gene products.

Requirement for membrane potential in injection of phage T4 DNA.

Clonal hybrid cell lines expressing cholinergic and adrenergic properties.

Interaction of phencyclidine ('angel dust') with a specific receptor in rat brain membranes.

Selective loss of noradrenergic phenotypic characters in neuroblasts of the rat embryo.

Conformation of gramicidin A channel in phospholipid vesicles: a 13C and 19F nuclear magnetic resonance study.

Characterization of alkylamine-sensitive site in alpha 2-macroglobulin.

Trace polypeptides in cellular extracts and human body fluids detected by two-dimensional electrophoresis and a highly sensitive silver stain.

Synthesis of a 600-nucleotide-long plus-strand DNA by virions of Moloney murine leukemia virus.

Comparison of amino acid sequences of two human histocompatibility antigens, HLA-A2 and HLA-B7: location of putative alloantigenic sites.

Differentiation of 3T3-L2 fibroblasts into adipose cells in bromodeoxyuridine-suppressed cultures.

Identification of a Rous sarcoma virus transformation-related protein in normal avian and mammalian cells.

Year: 1979 Volume: 76 Issue: 8

Year: 1979 Volume: 76 Issue: 7

Year: 1979 Volume: 76 Issue: 6

Year: 1979 Volume: 76 Issue: 5

Year: 1979 Volume: 76 Issue: 4

Year: 1979 Volume: 76 Issue: 3

Year: 1979 Volume: 76 Issue: 2

Year: 1979 Volume: 76 Issue: 1

Year: 1978 Volume: 75

Year: 1977 Volume: 74

Year: 1976 Volume: 73

Year: 1975 Volume: 72

Year: 1974 Volume: 71

Year: 1973 Volume: 70

Year: 1972 Volume: 69

Year: 1971 Volume: 68

Year: 1970 Volume: 67

Year: 1970 Volume: 66

Year: 1970 Volume: 65

Year: 1969 Volume: 64

Year: 1969 Volume: 63

Year: 1969 Volume: 62

Year: 1968 Volume: 61

Year: 1968 Volume: 60

Year: 1968 Volume: 59

Year: 1967 Volume: 58

Year: 1967 Volume: 57

Year: 1966 Volume: 56

Year: 1966 Volume: 55

Calculation of evolutionary trees from sequence data.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Komar, N. Klotz, L. C. Blanken, R. L. Mitchell, R. M.
Abstract	Evolutionary trees are usually calculated from comparisons of protein or nucleic acid sequences from present-day organisms by use of algorithms that use only the difference matrix, where the difference matrix is constructed from the sequence differences between pairs of sequences from the organisms. The difference matrix alone cannot define uniquely the correct position of the ancestor of the present-day organisms (root of the tree). Furthermore, methods using the difference matrix alone often fail to give the correct pattern of tree branching (topology) when the different sequences evolve at different rates. Only for equal rates of evolution can the difference matrix (when used with the so-called matrix method) yield exactly the correct topology and root. In this paper we present a method for calculating evolutionary trees from sequence data that uses, along with the difference matrix, the rate of evolution of the various sequences from their common ancestor. It is proven analytically that this method uniquely determines both the correct topology and root in theory for unequal rates of sequence evolution. How one would estimate an ancestral sequence to be used in the method is discussed in particular for the 5S RNA sequences from prokaryotes and eukaryotes and for ferredoxin sequences.
ISSN	00278424
e-ISSN	10916490
Journal	Proceedings of the National Academy of Sciences of the United States of America
Issue Number	9
Volume Number	76
Language	English
Publisher	National Academy of Sciences
Publisher Date	1979-01-01
Publisher Place	United States
Access Restriction	Open
Subject Keyword	Biological Evolution Proteins Genetics Amino Acid Sequence Genes Models, Theoretical Research Support, U.S. Gov't, Non-P.H.S. Multidisciplinary
Content Type	Text
Resource Type	Article
Subject	Multidisciplinary

Central Library (ISO-9001:2015 Certified)
Indian Institute of Technology Kharagpur
Kharagpur, West Bengal, India | PIN - 721302

See location in the Map
03222 282435
Mail: support@ndl.gov.in

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in