NDLI: Asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low salt concentration: analytic expressions for surface potential and preferential interaction coefficient.

Please wait, while we are loading the content...

Year: 2017 Volume: 114

Year: 2016 Volume: 113

Year: 2015 Volume: 112

Year: 2014 Volume: 111

Year: 2013 Volume: 110

Year: 2012 Volume: 109

Year: 2011 Volume: 108

Year: 2010 Volume: 107

Year: 2009 Volume: 106

Year: 2008 Volume: 105

Year: 2007 Volume: 104

Year: 2006 Volume: 103

Year: 2005 Volume: 102

Year: 2004 Volume: 101

Year: 2003 Volume: 100

Year: 2002 Volume: 99

Year: 2002 Volume: 99 Issue: 26

Year: 2002 Volume: 99 Issue: 25

Year: 2002 Volume: 99 Issue: 24

Year: 2002 Volume: 99 Issue: 23

Year: 2002 Volume: 99 Issue: 22

Year: 2002 Volume: 99 Issue: 21

Year: 2002 Volume: 99 Issue: 20

Year: 2002 Volume: 99 Issue: 19

Year: 2002 Volume: 99 Issue: 18

Year: 2002 Volume: 99 Issue: 17

Year: 2002 Volume: 99 Issue: 16

Year: 2002 Volume: 99 Issue: 15

Year: 2002 Volume: 99 Issue: 14

Year: 2002 Volume: 99 Issue: 13

Year: 2002 Volume: 99 Issue: 12

Year: 2002 Volume: 99 Issue: 11

Year: 2002 Volume: 99 Issue: 10

Year: 2002 Volume: 99 Issue: 9

Year: 2002 Volume: 99 Issue: 8

Year: 2002 Volume: 99 Issue: 7

Year: 2002 Volume: 99 Issue: 6

Year: 2002 Volume: 99 Issue: 5

Binding of Escherichia coli adhesin AfaE to CD55 triggers cell-surface expression of the MHC class I-related molecule MICA.

A comparison of experimental, theoretical, and numerical simulation Rayleigh-Taylor mixing rates.

Endocardial cushion and myocardial defects after cardiac myocyte-specific conditional deletion of the bone morphogenetic protein receptor ALK3.

Light modulation of Rubisco in Arabidopsis requires a capacity for redox regulation of the larger Rubisco activase isoform.

Cooperativity of Nkx3.1 and Pten loss of function in a mouse model of prostate carcinogenesis.

The human programmed cell death-2 (PDCD2) gene is a target of BCL6 repression: implications for a role of BCL6 in the down-regulation of apoptosis.

Up-regulation of nitric oxide synthase and modulation of the guanylate cyclase activity by corticotropin-releasing hormone but not urocortin II or urocortin III in cultured human pregnant myometrial cells.

The mur2 mutant of Arabidopsis thaliana lacks fucosylated xyloglucan because of a lesion in fucosyltransferase AtFUT1.

The interaction between the coactivator dCBP and Modulo, a chromatin-associated factor, affects segmentation and melanotic tumor formation in Drosophila.

Arctic 'ozone hole' in a cold volcanic stratosphere.

Rapid assembly dynamics of the Escherichia coli FtsZ-ring demonstrated by fluorescence recovery after photobleaching.

tRNA-like recognition of group I introns by a tyrosyl-tRNA synthetase.

Selective imaging of presynaptic activity in the mouse olfactory bulb shows concentration and structure dependence of odor responses in identified glomeruli.

Quorum-sensing regulators control virulence gene expression in Vibrio cholerae.

Molecular basis of R-type calcium channels in central amygdala neurons of the mouse

Cell senescence and telomere shortening induced by a new series of specific G-quadruplex DNA ligands.

A basolateral sorting motif in the MICA cytoplasmic tail.

Sexually dimorphic expression of estrogen receptor beta in the anteroventral periventricular nucleus of the rat preoptic area: implication in luteinizing hormone surge.

Identification in traditional herbal medications and confirmation by synthesis of factors that inhibit cholera toxin-induced fluid accumulation.

Noninvasive quantitative imaging of protein-protein interactions in living subjects.

Poly(ADP-ribose) polymerase-1 dependence of stress-induced transcription factors and associated gene expression in glia.

Homeostatic T cell proliferation in a T cell-dendritic cell coculture system.

CFTR with a partially deleted R domain corrects the cystic fibrosis chloride transport defect in human airway epithelia in vitro and in mouse nasal mucosa in vivo.

Mortality in 7B2 null mice can be rescued by adrenalectomy: Involvement of dopamine in ACTH hypersecretion

High-quality life extension by the enzyme peptide methionine sulfoxide reductase.

Revised estimates of human cochlear tuning from otoacoustic and behavioral measurements.

Conserved regulation of the lymphocyte-specific expression of lck in the Fugu and mammals.

Structural basis for the guanine nucleotide-binding activity of tissue transglutaminase and its regulation of transamidation activity

Framing effects and risky decisions in starlings.

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds.

Neurotoxin-induced degeneration of dopamine neurons in Caenorhabditis elegans.

Nitric oxide down-regulates brain-derived neurotrophic factor secretion in cultured hippocampal neurons.

Cytotoxic T lymphocyte antigen-4 (CTLA-4) limits the expansion of encephalitogenic T cells in experimental autoimmune encephalomyelitis (EAE)-resistant BALB/c mice.

Dynamics of bacterial phenotype selection in a colonized host.

Whole-gene APC deletions cause classical familial adenomatous polyposis, but not attenuated polyposis or 'multiple' colorectal adenomas.

Models of the extracellular domain of the nicotinic receptors and of agonist- and Ca2+-binding sites.

Experimentally based model of a complex between a snake toxin and the alpha 7 nicotinic receptor.

Impaired retention of spatial memory after transection of longitudinally oriented axons of hippocampal CA3 pyramidal cells.

Visualization of functionally activated circuitry in the brain.

Regulation of transferrin-mediated iron uptake by HFE, the protein defective in hereditary hemochromatosis.

Genomic DNA breakpoints in AML1/RUNX1 and ETO cluster with topoisomerase II DNA cleavage and DNase I hypersensitive sites in t(8;21) leukemia.

Network of coupled promoting motions in enzyme catalysis.

Effect of the human cytomegalovirus IE86 protein on expression of E2F-responsive genes: a DNA microarray analysis.

Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis.

Cortex mapping reveals regionally specific patterns of genetic and disease-specific gray-matter deficits in twins discordant for schizophrenia.

Interaction with glycosaminoglycans is required for cyclophilin B to trigger integrin-mediated adhesion of peripheral blood T lymphocytes to extracellular matrix.

Survival and regeneration of rubrospinal neurons 1 year after spinal cord injury.

Activity-dependent isolation of the presenilin- gamma -secretase complex reveals nicastrin and a gamma substrate.

Persistence of oligodendrocyte precursor cells and altered myelination in optic nerve associated to retina degeneration in mice devoid of all thyroid hormone receptors.

Heritability of lobar brain volumes in twins supports genetic models of cerebral laterality and handedness.

Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily.

Members of the PIAS family act as SUMO ligases for c-Jun and p53 and repress p53 activity.

Quantitative in vivo assessment of lung microstructure at the alveolar level with hyperpolarized 3He diffusion MRI.

Thyroid hormone is a critical determinant for the regulation of the cochlear motor protein prestin.

The mammalian oocyte orchestrates the rate of ovarian follicular development.

Enhanced signaling through the IL-2 receptor in CD8+ T cells regulated by antigen recognition results in preferential proliferation and expansion of responding CD8+ T cells rather than promotion of cell death.

Functional recovery following traumatic spinal cord injury mediated by a unique polymer scaffold seeded with neural stem cells.

Analysis of the ultraviolet B response in primary human keratinocytes using oligonucleotide microarrays.

Genes, pseudogenes, and Alu sequence organization across human chromosomes 21 and 22.

Isolation of a diterpenoid substance with potent neuroprotective activity from fetal calf serum.

Helix formation via conformation diffusion search.

The antitumor histone deacetylase inhibitor suberoylanilide hydroxamic acid exhibits antiinflammatory properties via suppression of cytokines.

Invariant chain induces B cell maturation in a process that is independent of its chaperonic activity.

The human pathogen Pseudomonas aeruginosa utilizes conserved virulence pathways to infect the social amoeba Dictyostelium discoideum.

Thyroid hormone activates oligodendrocyte precursors and increases a myelin-forming protein and NGF content in the spinal cord during experimental allergic encephalomyelitis.

NQO1 stabilizes p53 through a distinct pathway.

Melanin-concentrating hormone 1 receptor-deficient mice are lean, hyperactive, and hyperphagic and have altered metabolism.

GATA-1 binding sites mapped in the β-globin locus by using mammalian chIp-chip analysis

The peroxisome proliferator-activated receptor delta, an integrator of transcriptional repression and nuclear receptor signaling.

Apoptosis and melanogenesis in human melanoma cells induced by anthrax lethal factor inactivation of mitogen-activated protein kinase kinase.

Structural views of the ligand-binding cores of a metabotropic glutamate receptor complexed with an antagonist and both glutamate and $Gd^{3+}$

Ex vivo cell labeling with 64Cu-pyruvaldehyde-bis(N4-methylthiosemicarbazone) for imaging cell trafficking in mice with positron-emission tomography.

An RBCC protein implicated in maintenance of steady-state neuregulin receptor levels

Crystal structure and electron transfer kinetics of CueO, a multicopper oxidase required for copper homeostasis in Escherichia coli.

Construction of a rationally designed human cytomegalovirus variant encoding a temperature-sensitive immediate-early 2 protein.

Drug selection with paclitaxel restores expression of linked IL-2 receptor gamma -chain and multidrug resistance (MDR1) transgenes in canine bone marrow.

Cybr, a cytokine-inducible protein that binds cytohesin-1 and regulates its activity.

Targeted point mutations of p53 lead to dominant-negative inhibition of wild-type p53 function

Protection of cardiac mitochondria by diazoxide and protein kinase C: implications for ischemic preconditioning.

Interferon regulatory factor-3 is an in vivo target of DNA-PK.

Identification of a germ-line pro-B cell subset that distinguishes the fetal/neonatal from the adult B cell development pathway.

Conserved tryptophan in the core domain of transglutaminase is essential for catalytic activity.

Analysis of the AAA sensor-2 motif in the C-terminal ATPase domain of Hsp104 with a site-specific fluorescent probe of nucleotide binding.

Neuronal nitric-oxide synthase localization mediated by a ternary complex with synapsin and CAPON.

Prevalence of somatic alterations in the colorectal cancer cell genome.

Phosphatidylinositol 4,5-bisphosphate stimulates vesicle formation from liposomes by brain cytosol.

The TRAP/Mediator coactivator complex interacts directly with estrogen receptors alpha and beta through the TRAP220 subunit and directly enhances estrogen receptor function in vitro.

A cut above: discovery of an alternative excision repair pathway in bacteria.

Induction of T cell alertness by bacterial colonization of intestinal epithelium.

Chemical amplification with encapsulated reagents.

Asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low salt concentration: analytic expressions for surface potential and preferential interaction coefficient.

Matching gene activity with physiological functions.

The role of n-3 polyunsaturated fatty acids in brain: modulation of rat brain gene expression by dietary n-3 fatty acids.

Mechanism for antibody catalysis of the oxidation of water by singlet dioxygen.

A cofactor approach to copper-dependent catalytic antibodies

Proteome-scale purification of human proteins from bacteria.

Mot1 activates and represses transcription by direct, ATPase-dependent mechanisms

Transfer RNA-dependent amino acid biosynthesis: an essential route to asparagine formation.

Interactions among the protein and RNA subunits of Saccharomyces cerevisiae nuclear RNase P.

Microcin E492, a channel-forming bacteriocin from Klebsiella pneumoniae, induces apoptosis in some human cell lines.

13C NMR isotopomer analysis reveals a connection between pyruvate cycling and glucose-stimulated insulin secretion (GSIS).

Nucleotides and phospholipids compete for binding to the C terminus of $K_{ATP}$ channels

Natural beta-sheet proteins use negative design to avoid edge-to-edge aggregation.

Rationally designed mutations convert de novo amyloid-like fibrils into monomeric beta-sheet proteins.

Two-photon excitation microscopy of tryptophan-containing proteins.

Proton shuttle in green fluorescent protein studied by dynamic simulations.

Crystal structure of the yeast cytochrome bc1 complex with its bound substrate cytochrome c.

Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing.

Polarized cytokinesis in vacuolate cells of Arabidopsis.

Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex.

Expression profiling of a human cell line model of prostatic cancer reveals a direct involvement of interferon signaling in prostate tumor progression

DEC1 is a downstream target of TGF-beta with sequence-specific transcriptional repressor activities.

Binding of rainbow trout sperm to egg is mediated by strong carbohydrate-to-carbohydrate interaction between (KDN)GM3 (deaminated neuraminyl ganglioside) and Gg3-like epitope

Inference of functional regions in proteins by quantification of evolutionary constraints.

Wolbachia density and virulence attenuation after transfer into a novel host.

Genome complexity reduction for SNP genotyping analysis.

The organization of Physcomitrella patensRAD51 genes is unique among eukaryotic organisms.

Different contributions of thymopoiesis and homeostasis-driven proliferation to the reconstitution of naive and memory T cell compartments.

West Nile virus/dengue type 4 virus chimeras that are reduced in neurovirulence and peripheral virulence without loss of immunogenicity or protective efficacy.

Primary role for adherent leukocytes in sickle cell vascular occlusion: a new paradigm.

PATE, a gene expressed in prostate cancer, normal prostate, and testis, identified by a functional genomic approach.

A prototypic platelet septin and its participation in secretion.

Early changes in hepatitis C viral quasispecies during interferon therapy predict the therapeutic outcome.

Mycobacterium tuberculosis WhiB3 interacts with RpoV to affect host survival but is dispensable for in vivo growth.

Antivirally active MxA protein sequesters La Crosse virus nucleocapsid protein into perinuclear complexes.

Replication of Cryptococcus neoformans in macrophages is accompanied by phagosomal permeabilization and accumulation of vesicles containing polysaccharide in the cytoplasm.

Involvement of striatal and extrastriatal DARPP-32 in biochemical and behavioral effects of fluoxetine (Prozac).

DARPP-32 mediates serotonergic neurotransmission in the forebrain.

Order-sensitive plasticity in adult primary auditory cortex.

Neuronal activity-dependent membrane traffic at the neuromuscular junction.

Ligand binding to somatostatin receptors induces receptor-specific oligomer formation in live cells.

Heterologous regulation of trafficking and signaling of G protein-coupled receptors: beta-arrestin-dependent interactions between neurokinin receptors.

A stilbene synthase from Japanese red pine (Pinus densiflora): implications for phytoalexin accumulation and down-regulation of flavonoid biosynthesis.

Neural mechanisms of planning: a computational analysis using event-related fMRI.

Year: 2002 Volume: 99 Issue: 4

Year: 2002 Volume: 99 Issue: Suppl 4

Year: 2002 Volume: 99 Issue: 3

Year: 2002 Volume: 99 Issue: Suppl 3

Year: 2002 Volume: 99 Issue: 2

Year: 2002 Volume: 99 Issue: Suppl 2

Year: 2002 Volume: 99 Issue: 1

Year: 2002 Volume: 99 Issue: Suppl 1

Year: 2001 Volume: 98

Year: 2000 Volume: 97

Year: 1999 Volume: 96

Year: 1998 Volume: 95

Year: 1997 Volume: 94

Year: 1996 Volume: 93

Year: 1995 Volume: 92

Year: 1994 Volume: 91

Year: 1993 Volume: 90

Year: 1992 Volume: 89

Year: 1991 Volume: 88

Year: 1990 Volume: 87

Year: 1989 Volume: 86

Year: 1988 Volume: 85

Year: 1987 Volume: 84

Year: 1986 Volume: 83

Year: 1985 Volume: 82

Year: 1984 Volume: 81

Year: 1983 Volume: 80

Year: 1982 Volume: 79

Year: 1981 Volume: 78

Year: 1980 Volume: 77

Year: 1979 Volume: 76

Year: 1978 Volume: 75

Year: 1977 Volume: 74

Year: 1976 Volume: 73

Year: 1975 Volume: 72

Year: 1974 Volume: 71

Year: 1973 Volume: 70

Year: 1972 Volume: 69

Year: 1971 Volume: 68

Year: 1970 Volume: 67

Year: 1970 Volume: 66

Year: 1970 Volume: 65

Year: 1969 Volume: 64

Year: 1969 Volume: 63

Year: 1969 Volume: 62

Year: 1968 Volume: 61

Year: 1968 Volume: 60

Year: 1968 Volume: 59

Year: 1967 Volume: 58

Year: 1967 Volume: 57

Year: 1966 Volume: 56

Year: 1966 Volume: 55

Asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low salt concentration: analytic expressions for surface potential and preferential interaction coefficient.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Shkel, Irina A. Tsodikov, Oleg V. Record, M. Thomas
Description	Author Affiliation: Shkel IA ( Department of Chemistry, University of Wisconsin, Madison, WI 53706, USA. ishkel@facstaff.wisc.edu);
Abstract	The analytic solution to the nonlinear Poisson-Boltzmann equation describing the ion distributions surrounding a nucleic acid or other cylindrical polyions as a function of polyion structural quantities and salt concentration ([salt]) has been sought for more than 80 years to predict the effect of these quantities on the thermodynamics of polyion processes. Here we report an accurate asymptotic solution of the cylindrical nonlinear Poisson-Boltzmann equation at low to moderate concentration of a symmetrical electrolyte (< or = 0.1 M 1:1 salt). The approximate solution for the potential is derived as an asymptotic series in the small parameter var epsilon(-1), where var epsilon identical with kappa(-1)/a, the ratio of the Debye length (kappa(-1)) to the polyion radius (a). From the potential at the polyion surface, we obtain the coulombic contribution to the salt-polyelectrolyte preferential interaction (Donnan) coefficient (Gamma(u)coul) per polyion charge at any reduced axial charge density xi. Gamma(u)coul is the sum of the previously recognized low-salt limiting value and a salt-dependent contribution, analytically derived here in the range of low-salt concentrations. As an example of the application of this solution, we obtain an analytic expression for the derivative of the midpoint temperature of a nucleic acid conformational transition with respect to the logarithm of salt concentration (dT(m)/d ln[salt]) in terms of [salt] and nucleic acid structural quantities. This expression explains the experimental observation that this derivative is relatively independent of salt concentration but deviates significantly from its low-salt limiting value in the range 0.01-0.1 M.
ISSN	00278424
e-ISSN	10916490
Journal	Proceedings of the National Academy of Sciences of the United States of America
Issue Number	5
Volume Number	99
Language	English
Publisher	National Academy of Sciences
Publisher Date	2002-03-01
Publisher Place	United States
Access Restriction	Open
Subject Keyword	Nucleic Acids Chemistry Gene Expression Poisson Distribution RNA Thermodynamics Research Support, U.S. Gov't, P.H.S. Multidisciplinary
Content Type	Text
Resource Type	Article
Subject	Multidisciplinary

Central Library (ISO-9001:2015 Certified)
Indian Institute of Technology Kharagpur
Kharagpur, West Bengal, India | PIN - 721302

See location in the Map
03222 282435
Mail: support@ndl.gov.in

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in