NDLI: Heterogeneous geographic patterns of nucleotide sequence diversity between two alcohol dehydrogenase genes in wild barley (Hordeum vulgare subspecies spontaneum).

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Heterogeneous geographic patterns of nucleotide sequence diversity between two alcohol dehydrogenase genes in wild barley (Hordeum vulgare subspecies spontaneum).

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Heterogeneous geographic patterns of nucleotide sequence diversity between two alcohol dehydrogenase genes in wild barley (Hordeum vulgare subspecies spontaneum).

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Brown, A. H. Clegg, M. T. Lin, J. Z.
Spatial Coverage	Turkmenistan
Description	Author Affiliation: Lin JZ ( Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA.);
Abstract	Patterns of nucleotide sequence diversity in the predominantly self-fertilizing species Hordeum vulgare subspecies spontaneum (wild barley) are compared between the putative alcohol dehydrogenase 3 locus (denoted 'adh3') and alcohol dehydrogenase 1 (adh1), two related but unlinked loci. The data consist of a sequence sample of 1,873 bp of 'adh3' drawn from 25 accessions that span the species range. There were 104 polymorphic sites in the sequenced region of 'adh3.' The data reveal a strong geographic pattern of diversity at 'adh3' despite geographic uniformity at adh1. Moreover, levels of nucleotide sequence diversity differ by nearly an order of magnitude between the two loci. Genealogical analysis resolved two distinct clusters of 'adh3' alleles (dimorphic sequence types) that coalesce roughly 3 million years ago. One type consists of accessions from the Middle East, and the other consists of accessions predominantly from the Near East. The two 'adh3' sequence types are characterized by a high level of differentiation between clusters ( approximately 2.2%), which induces an overall excess of intermediate frequency variants in the pooled sample. Finally, there is evidence of intralocus recombination in the 'adh3' data, despite the high level of self-fertilization characteristic of wild barley.
ISSN	00278424
e-ISSN	10916490
Journal	Proceedings of the National Academy of Sciences of the United States of America
Issue Number	2
Volume Number	98
Language	English
Publisher	National Academy of Sciences
Publisher Date	2001-03-01
Publisher Place	United States
Access Restriction	Open
Subject Keyword	Alcohol Dehydrogenase Genetics Genes, Plant Hordeum Plant Proteins Afghanistan Evolution, Molecular Frameshift Mutation Gene Duplication Gene Frequency Genetic Variation Enzymology Iraq Israel Jordan Linkage Disequilibrium Models, Genetic Molecular Sequence Data Phylogeny Polymorphism, Genetic Recombination, Genetic Sequence Alignment Sequence Homology, Nucleic Acid Syria Turkey Turkmenistan Comparative Study Research Support, Non-U.S. Gov't Multidisciplinary
Content Type	Text
Resource Type	Article
Subject	Multidisciplinary

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