NDLI: Celldesigner: A Modeling Tool for Biochemical Networks

Content Provider	IEEE Xplore Digital Library
Author	Funahashi, A. Matsuoka, Y. Jouraku, A. Kitano, H. Kikuchi, N.
Copyright Year	2006
Description	Author affiliation: Kitano Symbiotic Syst., Tokyo (Funahashi, A.; Matsuoka, Y.; Jouraku, A.; Kitano, H.)
Abstract	Understanding of logic and dynamics of gene-regulatory and biochemical networks is a major challenge of systems biology. To facilitate this research topic, we have developed CellDesigner, a modeling tool of gene-regulatory and biochemical networks. CellDesigner supports users to easily create such networks using solidly defined and comprehensive graphical representation (SBGN: systems biology graphical notation). CellDesigner is SBML compliant, and is SBW-enabled software so that it can import/export SBML described documents and can integrate with other SBW-enabled simulation/analysis software packages. CellDesigner also supports simulation and parameter search, which is supported by integration with SBML ODE Solver, enabling us to simulate through our sophisticated graphical user interface. We could also browse and modify existing SBML models with references to existing databases. CellDesigner is implemented in Java, thus it runs on various platforms such as Windows, Linux, and MacOS X. CellDesigner is freely available via the Web
Starting Page	1707
Ending Page	1712
File Size	1326212
Page Count	6
File Format	PDF
ISBN	1424405009
DOI	10.1109/WSC.2006.322946
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2006-12-03
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Biological system modeling Systems biology Logic Analytical models Software packages Graphical user interfaces Databases Java Linux
Content Type	Text
Resource Type	Article

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