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| Content Provider | World Health Organization (WHO)-Global Index Medicus |
|---|---|
| Author | Mugler, Andrew Franks, Riley Wiggins, Chris H. Grinshpun, Boris |
| Description | Author Affiliation: Mugler A ( Department of Physics, Columbia University, New York, NY 10027, USA. mugler@amolf.nl); |
| Abstract | Over the past decade, a number of researchers in systems biology have sought to relate the function of biological systems to their network-level descriptions--lists of the most important players and the pairwise interactions between them. Both for large networks (in which statistical analysis is often framed in terms of the abundance of repeated small subgraphs) and for small networks which can be analyzed in greater detail (or even synthesized in vivo and subjected to experiment), revealing the relationship between the topology of small subgraphs and their biological function has been a central goal. We here seek to pose this revelation as a statistical task, illustrated using a particular setup which has been constructed experimentally and for which parameterized models of transcriptional regulation have been studied extensively. The question 'how does function follow form' is here mathematized by identifying which topological attributes correlate with the diverse possible information-processing tasks which a transcriptional regulatory network can realize. The resulting method reveals one form-function relationship which had earlier been predicted based on analytic results, and reveals a second for which we can provide an analytic interpretation. Resulting source code is distributed via http://formfunction.sourceforge.net. |
| ISSN | 00278424 |
| e-ISSN | 10916490 |
| Journal | Proceedings of the National Academy of Sciences of the United States of America |
| Issue Number | 2 |
| Volume Number | 108 |
| Language | English |
| Publisher | National Academy of Sciences |
| Publisher Date | 2011-01-01 |
| Publisher Place | United States |
| Access Restriction | Open |
| Subject Keyword | Models, Statistical Transcription, Genetic Algorithms Gene Expression Regulation Models, Biological Models, Theoretical Systems Biology Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S. Multidisciplinary |
| Content Type | Text |
| Resource Type | Article |
| Subject | Multidisciplinary |
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