NDLI: TruSPAdes: barcode assembly of TruSeq synthetic long reads.

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TruSPAdes: barcode assembly of TruSeq synthetic long reads.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Bankevich, Anton Pevzner, Pavel A.
Description	Country affiliation: RUSSIA Author Affiliation: Bankevich A ( Center for Algorithmic Biotechnology, Institute for Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia.); Pevzner PA ( Center for Algorithmic Biotechnology, Institute for Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia.)
Abstract	The recently introduced TruSeq synthetic long read (TSLR) technology generates long and accurate virtual reads from an assembly of barcoded pools of short reads. The TSLR method provides an attractive alternative to existing sequencing platforms that generate long but inaccurate reads. We describe the truSPAdes algorithm (http://bioinf.spbau.ru/spades) for TSLR assembly and show that it results in a dramatic improvement in the quality of metagenomics assemblies.
File Format	HTM / HTML
ISSN	15487091
Issue Number	3
Volume Number	13
e-ISSN	15487105
Journal	Nature Methods
Language	English
Publisher	Nature Publishing Group
Publisher Date	2016-03-01
Publisher Place	United States
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Discipline Clinical Laboratory Techniques Algorithms Chromosome Mapping Methods Dna Barcoding, Taxonomic High-throughput Nucleotide Sequencing Sequence Analysis, Dna Software Base Sequence Gene Library Molecular Sequence Data Sequence Alignment Journal Article Research Support, Non-u.s. Gov't
Content Type	Text
Resource Type	Article
Subject	Cell Biology Biochemistry Molecular Biology Biotechnology

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Whole-Exome Enrichment with the Illumina TruSeq Exome Enrichment Platform.

Sense from sequence reads: methods for alignment and assembly.

Quantitative bias in illumina truseq and a novel post amplification barcoding strategy for multiplexed dna and small rna deep sequencing (2011).

Assembly and diploid architecture of an individual human genome via single-molecule technologies.

DeeZ: reference-based compression by local assembly.

Methodological aspects of whole-genome bisulfite sequencing analysis.

Genomic footprinting.

MutationTaster2: mutation prediction for the deep-sequencing age.

Fast and accurate mapping of Complete Genomics reads.

TruSPAdes: barcode assembly of TruSeq synthetic long reads.

Similar Documents

Whole-Exome Enrichment with the Illumina TruSeq Exome Enrichment Platform.

Sense from sequence reads: methods for alignment and assembly.

Quantitative bias in illumina truseq and a novel post amplification barcoding strategy for multiplexed dna and small rna deep sequencing (2011).

Assembly and diploid architecture of an individual human genome via single-molecule technologies.

DeeZ: reference-based compression by local assembly.

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TruSPAdes: barcode assembly of TruSeq synthetic long reads.