NDLI: Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.

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Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Qu, Kun Garamszegi, Sara Wu, Felix Thorvaldsdottir, Helga Liefeld, Ted Ocana, Marco Borges-Rivera, Diego Pochet, Nathalie Robinson, James T. Demchak, Barry Hull, Tim Ben-Artzi, Gil Blankenberg, Daniel Barber, Galt P. Lee, Brian T. Kuhn, Robert M. Nekrutenko, Anton Segal, Eran Ideker, Trey Reich, Michael Regev, Aviv Chang, Howard Y. Mesirov, Jill P.
Description	Country affiliation: United States Author Affiliation: Qu K ( Program in Epithelial Biology, Stanford University School of Medicine, Stanford, California, USA.); Garamszegi S ( The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.); Wu F ( The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.); Thorvaldsdottir H ( The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.); Liefeld T ( The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.); Ocana M ( Department of Medicine, University of California, San Diego, La Jolla, California, USA.); Borges-Rivera D ( The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.); Pochet N ( Department of Medicine, University of California, San Diego, La Jolla, California, USA.); Robinson JT ( Department of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA.); Demchak B ( The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.); Hull T ( Program in Translational NeuroPsychiatric Genomics, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.); Ben-Artzi G ( The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.); Blankenberg D ( Department of Medicine, University of California, San Diego, La Jolla, California, USA.); Barber GP ( Department of Medicine, University of California, San Diego, La Jolla, California, USA.); Lee BT ( Department of Medicine, University of California, San Diego, La Jolla, California, USA.); Kuhn RM ( Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.); Nekrutenko A ( Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel.); Segal E ( Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.); Ideker T ( UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, USA.); Reich M ( UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, USA.); Regev A ( UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, California, USA.); Chang HY ( Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.); Mesirov JP ( Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, Israel.)
Abstract	Complex biomedical analyses require the use of multiple software tools in concert and remain challenging for much of the biomedical research community. We introduce GenomeSpace (http://www.genomespace.org), a cloud-based, cooperative community resource that currently supports the streamlined interaction of 20 bioinformatics tools and data resources. To facilitate integrative analysis by non-programmers, it offers a growing set of 'recipes', short workflows to guide investigators through high-utility analysis tasks.
File Format	HTM / HTML
ISSN	15487091
e-ISSN	15487105
DOI	10.1038/nmeth.3732
Journal	Nature Methods
Issue Number	3
Volume Number	13
Language	English
Publisher	Nature Publishing Group
Publisher Date	2016-03-01
Publisher Place	United States
Access Restriction	Open
Subject Keyword	Discipline Clinical Laboratory Techniques Algorithms Chromosome Mapping Computational Biology Databases, Genetic Genome, Human Genetics Data Mining Systems Integration Research Support, N.i.h., Extramural Research Support, Non-u.s. Gov't
Content Type	Text
Resource Type	Article
Subject	Cell Biology Biochemistry Molecular Biology Biotechnology

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

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