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| Content Provider | Springer Nature Link |
|---|---|
| Author | Parameswari, B. Bagyalakshmi, K. Viswanathan, R. Chinnaraja, C. |
| Copyright Year | 2012 |
| Abstract | Sugarcane streak mosaic virus (SCSMV), a member of the genus Poacevirus, family Potyviridae, is an important viral pathogen affecting sugarcane cultivation in India. The complete nucleotide sequence of a SCSMV isolate from India (SCSMV-IND) was determined. The linear, assembled, single-stranded positive-sense RNA genome of SCSMV-IND was 9,786 nucleotides in length (excluding the poly (A) tail) and encoded a polyprotein of 3,131 amino acid residues. The genome of SCSMV-IND shared high degree of sequence identity with SCSMV-PAK (93 % at nucleotide and 97 % at amino acid), and shared only 81 % nucleotide and 94 % amino acid identities with all the four SCSMV isolates (SCSMV-JP1, -JP2, -ID, and -THA). Phylogenetic tree analysis of the complete genome sequences of SCSMV isolates revealed that they can be clustered into two groups. SCSMV-IND and -AP isolates showed 18 % (nucleotide) divergence within the highly conserved 3′ partial genome, suggesting a high level of genetic diversity among the Indian SCSMV isolates. |
| Starting Page | 186 |
| Ending Page | 189 |
| Page Count | 4 |
| File Format | |
| ISSN | 09208569 |
| Journal | Virus Genes |
| Volume Number | 46 |
| Issue Number | 1 |
| e-ISSN | 1572994X |
| Language | English |
| Publisher | Springer US |
| Publisher Date | 2012-09-26 |
| Publisher Place | Boston |
| Access Restriction | One Nation One Subscription (ONOS) |
| Subject Keyword | Sugarcane Sugarcane streak mosaic virus Complete genome India Molecular variation Recombination analysis Medical Microbiology Virology Plant Sciences |
| Content Type | Text |
| Resource Type | Article |
| Subject | Virology Genetics Medicine Molecular Biology |
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