NDLI: Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach.

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Roles of the 35S promoter and multiple overlapping domains in the pathogenicity of the pararetrovirus cauliflower mosaic virus.

The concentration of Ca2+ that solubilizes outer capsid proteins from rotavirus particles is dependent on the strain.

Frequency of multiple Epstein-Barr virus infections in T-cell-immunocompromised individuals.

Isolation of intertypic recombinants of Epstein-Barr virus from T-cell-immunocompromised individuals.

The adenovirus E3-14.7K protein and the E3-10.4K/14.5K complex of proteins, which independently inhibit tumor necrosis factor (TNF)-induced apoptosis, also independently inhibit TNF-induced release of arachidonic acid.

AP1 enhances polyomavirus DNA replication by promoting T-antigen-mediated unwinding of DNA.

Among all human T-cell leukemia virus type 1 proteins, tax, polymerase, and envelope proteins are predicted as preferential targets for the HLA-A2-restricted cytotoxic T-cell response.

Self-deleting retrovirus vectors for gene therapy.

Serial passage of tobacco rattle virus under different selection conditions results in deletion of structural and nonstructural genes in RNA 2.

Detection of simian immunodeficiency virus (SIV)-specific CD8+ T cells in macaques protected from SIV challenge by prior SIV subunit vaccination.

Mengovirus leader is involved in the inhibition of host cell protein synthesis.

Human immunodeficiency virus type 1 gp120 induces anergy in human peripheral blood lymphocytes by inducing interleukin-10 production.

Unintegrated bovine leukemia virus DNA: association with viral expression and disease.

Inactivation of murine leukemia virus by compounds that react with the zinc finger in the viral nucleocapsid protein.

The N-glycan of the SCR 2 region is essential for membrane cofactor protein (CD46) to function as a measles virus receptor.

Hepatitis B virus HBx protein induces transcription factor AP-1 by activation of extracellular signal-regulated and c-Jun N-terminal mitogen-activated protein kinases.

Identification and characterization of a hepatitis delta virus RNA transcriptional promoter.

Human immunodeficiency virus Type 1 nucleocapsid protein (NCp7) directs specific initiation of minus-strand DNA synthesis primed by human tRNA(Lys3) in vitro: studies of viral RNA molecules mutated in regions that flank the primer binding site.

Down-regulation of paramyxovirus hemagglutinin-neuraminidase glycoprotein surface expression by a mutant fusion protein containing a retention signal for the endoplasmic reticulum.

Rescue of a synthetic chloramphenicol acetyltransferase RNA into influenza virus-like particles obtained from recombinant plasmids.

Mutations in the carboxy-terminal domain of TBP affect the synthesis of human immunodeficiency virus type 1 full-length and short transcripts similarly.

Duck hepatitis B virus polymerase acts as a suppressor of core protein translation.

cis-active structural motifs involved in specific encapsidation of Moloney murine leukemia virus RNA.

Mechanisms of herpes simplex virus type 1 reactivation.

Protection against myxomatosis and rabbit viral hemorrhagic disease with recombinant myxoma viruses expressing rabbit hemorrhagic disease virus capsid protein.

The Sendai paramyxovirus accessory C proteins inhibit viral genome amplification in a promoter-specific fashion.

RNA replication by a respiratory syncytial virus RNA analog does not obey the rule of six and retains a nonviral trinucleotide extension at the leader end.

Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach.

Accumulation of alfalfa mosaic virus RNAs 1 and 2 requires the encoded proteins in cis.

Structural analysis of human immunodeficiency virus type 1 Gag protein interactions, using cysteine-specific reagents.

A single gene encoding the fiber is responsible for variations in virulence in the fowl adenoviruses.

Species-specific effects of the hcf-1 gene on baculovirus virulence.

Functional and physical interactions between the Epstein-Barr virus (EBV) proteins BZLF1 and BMRF1: Effects on EBV transcription and lytic replication.

The HeLa cell receptor for enterovirus 70 is decay-accelerating factor (CD55).

Nonhomologous RNA-RNA recombination events at the 3' nontranslated region of the Sindbis virus genome: hot spots and utilization of nonviral sequences.

Proviral burden and infection kinetics of feline immunodeficiency virus in lymphocyte subsets of blood and lymph node.

Cyclosporine A-resistant human immunodeficiency virus type 1 mutants demonstrate that Gag encodes the functional target of cyclophilin A.

Interaction between hepatitis C virus core protein and E1 envelope protein.

Chronic human immunodeficiency virus type 1 infection of myeloid cells disrupts the autoregulatory control of the NF-kappaB/Rel pathway via enhanced IkappaBalpha degradation.

The tax gene of human T-cell leukemia virus type 2 is essential for transformation of human T lymphocytes.

Antisense oligonucleotide inhibition of hepatitis C virus gene expression in transformed hepatocytes.

Inhibition of human immunodeficiency virus type 1 production in infected peripheral blood mononuclear cells by human leukocyte antigen class I-specific antibodies: evidence for a novel antiviral mechanism.

Structure of the rat cytomegalovirus genome termini.

Interleukin-4 causes delayed virus clearance in influenza virus-infected mice.

Mechanisms of human immunodeficiency virus Type 1 (HIV-1) neutralization: irreversible inactivation of infectivity by anti-HIV-1 antibody.

Woodchuck hepatitis virus X protein is present in chronically infected woodchuck liver and woodchuck hepatocellular carcinomas which are permissive for viral replication.

Herpes simplex virus type 1 protein IE63 affects the nuclear export of virus intron-containing transcripts.

An eight-nucleotide sequence in the potato virus X 3' untranslated region is required for both host protein binding and viral multiplication.

The variable 3' ends of a human cytomegalovirus oriLyt transcript (SRT) overlap an essential, conserved replicator element.

Efficient infection of cells in culture by type O foot-and-mouth disease virus requires binding to cell surface heparan sulfate.

Sequence and structural determinants required for priming of plus-strand DNA synthesis by the human immunodeficiency virus type 1 polypurine tract.

The human immunodeficiency virus type 1 Vif protein modulates the postpenetration stability of viral nucleoprotein complexes.

Characterization of the functional properties of env genes from long-term survivors of human immunodeficiency virus type 1 infection.

Two distinct upstream regulatory domains containing multicopy cellular transcription factor binding sites provide basal repression and inducible enhancer characteristics to the immediate-early IES (US3) promoter from human cytomegalovirus.

Induction of apoptosis by La Crosse virus infection and role of neuronal differentiation and human bcl-2 expression in its prevention.

vif-negative human immunodeficiency virus type 1 persistently replicates in primary macrophages, producing attenuated progeny virus.

Overexpression of the herpes simplex virus type 1 immediate-early regulatory protein, ICP27, is responsible for the aberrant localization of ICP0 and mutant forms of ICP4 in ICP4 mutant virus-infected cells.

Peptide transporter (TAP-1 and TAP-2)-independent endogenous processing of Epstein-Barr virus (EBV) latent membrane protein 2A: implications for cytotoxic T-lymphocyte control of EBV-associated malignancies.

Interaction cloning of NS1-I, a human protein that binds to the nonstructural NS1 proteins of influenza A and B viruses.

Importance of the Ser-132 phosphorylation site in cell transformation and apoptosis induced by the adenovirus type 5 E1A protein.

cis-acting elements involved in transcriptional regulation of the herpes simplex virus type 1 latency-associated promoter 1 (LAP1) in vitro and in vivo.

Cytomegalovirus assemblin: the amino and carboxyl domains of the proteinase form active enzyme when separately cloned and coexpressed in eukaryotic cells.

Anterograde, transneuronal transport of herpes simplex virus type 1 strain H129 in the murine visual system.

Identification of domains in canine parvovirus VP2 essential for the assembly of virus-like particles.

Increased pathogenicity in a pseudorecombinant bipartite geminivirus correlates with intermolecular recombination.

Transforming growth factor beta1 induces differentiation in human papillomavirus-positive keratinocytes.

Alteration of intracellular potassium and sodium concentrations correlates with induction of cytopathic effects by human immunodeficiency virus.

Disulfide bond structure determination and biochemical analysis of glycoprotein C from herpes simplex virus.

Biosynthesis of glycoproteins E and I of feline herpesvirus: gE-gI interaction is required for intracellular transport.

Herpes simplex virus gene expression in neurons: viral DNA synthesis is a critical regulatory event in the branch point between the lytic and latent pathways.

Cell type-specific fusion cofactors determine human immunodeficiency virus type 1 tropism for T-cell lines versus primary macrophages.

Lack of effect of mouse adenovirus type 1 infection on cell surface expression of major histocompatibility complex class I antigens.

Interaction of human immunodeficiency virus type 1 Tat with a unique site of TFIID inhibits negative cofactor Dr1 and stabilizes the TFIID-TFIIA complex.

Human T-cell leukemia virus type 2 Rex inhibits pre-mRNA splicing in vitro at an early stage of spliceosome formation.

African green monkey kidney (Vero) cells provide an alternative host cell system for influenza A and B viruses.

The outcome of poliovirus infections in K562 cells is cytolytic rather than persistent after hemin-induced differentiation.

The 5' nontranslated region of potato virus X RNA affects both genomic and subgenomic RNA synthesis.

Disulfide bridge-mediated folding of Sindbis virus glycoproteins.

A critical proteolytic cleavage site near the C terminus of the yeast retrotransposon Ty1 Gag protein.

The extracellular domain of the Epstein-Barr virus BZLF2 protein binds the HLA-DR beta chain and inhibits antigen presentation.

Retrovirus packaging cells based on 10A1 murine leukemia virus for production of vectors that use multiple receptors for cell entry.

Recombinant human immunodeficiency virus type 1 genomes with tat unconstrained by overlapping reading frames reveal residues in Tat important for replication in tissue culture.

Proteasome complex as a potential cellular target of hepatitis B virus X protein.

A putative receptor for Venezuelan equine encephalitis virus from mosquito cells.

FAETL motif required for leukemic transformation by v-Myb.

Paradoxical interactions between human delta hepatitis agent RNA and the cellular protein kinase PKR.

Transcriptional activation of a retrovirus enhancer by CBF (AML1) requires a second factor: evidence for cooperativity with c-Myb.

cis-acting elements that mediate the negative regulation of Moloney murine leukemia virus in mouse early embryos.

Transmissible gastroenteritis coronavirus, but not the related porcine respiratory coronavirus, has a sialic acid (N-glycolylneuraminic acid) binding activity.

Pathogenesis of wild-type and leaderless foot-and-mouth disease virus in cattle.

Endogenous reverse transcription assays reveal high-level resistance to the triphosphate of (-)2'-dideoxy-3'-thiacytidine by mutated M184V human immunodeficiency virus type 1.

Simian immunodeficiency virus infection of CD8+ lymphocytes in vivo.

Homologous and nonhomologous retroviral recombinations are both involved in the transfer by infectious particles of defective avian leukosis virus-derived transcomplementing genomes.

Distinct functional domains in the cowpea mosaic virus movement protein.

Human immunodeficiency virus fitness in vivo: calculations based on a single zidovudine resistance mutation at codon 215 of reverse transcriptase.

Analysis of conserved domains of UL41 of herpes simplex virus type 1 in virion host shutoff and pathogenesis.

Cellular mechanisms involved in protection and recovery from influenza virus infection in immunodeficient mice.

Properties of the novel herpes simplex virus type 1 origin binding protein, OBPC.

Human cytomegalovirus (HCMV) smallest capsid protein identified as product of short open reading frame located between HCMV UL48 and UL49.

Identification and characterization of pseudorabies virus glycoprotein gM as a nonessential virion component.

Neutralizing antibodies to different proteins of African swine fever virus inhibit both virus attachment and internalization.

Fine mapping and characterization of the Rous sarcoma virus Pr76gag late assembly domain.

The pCL vector system: rapid production of helper-free, high-titer, recombinant retroviruses.

Increased interleukin-10 mRNA expression in tumor-bearing or persistently lymphocytotic animals infected with bovine leukemia virus.

A simian varicella virus (SVV) homolog to varicella-zoster virus gene 21 is expressed in monkey ganglia latently infected with SVV.

Evidence for a phosphorylation site in cytomegalovirus glycoprotein gB.

Maintaining the integrity of human immunodeficiency virus sequence databases.

A cooperative interaction of human T-cell leukemia virus type 1 Tax with the p21 cyclin-dependent kinase inhibitor activates the human immunodeficiency virus type 1 enhancer.

Phylogenetic comparison of the S3 gene of United States prototype strains of bluetongue virus with that of field isolates from California.

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Structure, function, and evolution of adenovirus-associated RNA: a phylogenetic approach.

Content Provider	PubMed Central
Author	Ma, Y. Mathews, M. B.
Abstract	To explore the structure and function of a small regulatory RNA, we examined the virus-associated (VA) RNA species of all 47 known human adenovirus serotypes and of one simian virus, SA7. The VA RNA gene regions of 43 human adenoviruses were amplified and sequenced, and the structures of 10 representative VA RNAs were probed by nuclease sensitivity analysis. Most human viruses have two VA RNA species, VA RNA, and VA RNAII, but nine viruses (19%) have a single VA RNA gene. Sequence alignments classified the RNAs into eight families, corresponding broadly to the known virus groups, and three superfamilies. One superfamily contains the single VA RNAs of groups A and F and the VA RNAI species of group C; the second contains the VA RNAI species of groups B1, D, and E and the unclassified viruses (adenovirus types 42 to 47), as well as the single VA RNAs of group B2; and the third contains all VA RNAII species. Fourteen regions of homology occur throughout the molecule. The longest of these correspond to transcription signals; most of the others participate in RNA secondary structure. The previously identified tetranucleotide pair, GGGU:ACCC, is nearly invariant, diverging slightly (to GGGU:ACCU) only in the two group F viruses and forming a stem in the central domain that is critical for VA RNA structure and function. Secondary structure models which accommodate the nuclease sensitivity data and sequence variations within each family were generated. The major structural features-the terminal stem, apical stem-loop, and central domain-are conserved in all VA RNAs, but differences exist in the apical stem and central domains, especially of the VA RNAII species. Sequence analysis suggests that an ancestral VA RNA gene underwent duplication during the evolution of viruses containing two VA RNA genes. Although the VA RNAII gene seems to have been lost or inactivated by secondary deletion events in some viruses, the high degree of homology among the VA RNAII species implies that this RNA may play an undiscovered role in virus survival. We speculate that the VA RNA genes originated from cellular sequences containing multiple tRNA genes.
Starting Page	5083
File Format	PDF
ISSN	10985514
e-ISSN	10985514
Journal	Journal of Virology
Issue Number	8
Volume Number	70
Language	English
Publisher Date	1996-08-01
Access Restriction	Open
Subject Keyword	Research in Higher Education
Content Type	Text
Resource Type	Article
Subject	Virology Immunology Microbiology Insect Science

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