NDLI: Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae).

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Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae).

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Characterization of the complete mitochondrial genome of the Rock pigeon, Columba livia (Columbiformes: Columbidae).

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Li, X. F. Chen, L. Zhang, L. Q. Kan, X. Z. Zhang, X. W. Qian, C. J. Wang, L.
Description	Country affiliation: China Author Affiliation: Kan XZ ( The Provincial Key Laboratory of the Conservation and Exploitation Research of Biological Resources in Anhui, College of Life Sciences, Anhui Normal University, Wuhu, China.)
Abstract	The rock pigeon (Columba livia), or Rock dove, is a member of the bird family Columbidae. We mapped the complete mitochondrial genome of the Rock pigeon. The mitochondrial genome of this species is a circular molecule of 17,229 bp in length, encoding a standard set of 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes, plus a putative control region, demonstrating a structure very similar to that of other birds. As found in other vertebrates, most of these genes are coded on the H-strand, except for NADH dehydrogenase subunit 6 (nad6) and eight tRNA genes (Gln, Ala, Asn, Cys, Tyr, Ser(UCN), Pro, Glu). The AT skew and GC skew of the whole genome, protein-coding genes, tRNA, rRNA, and the control region were calculated for the complete mitochondrial genomes of 30 avian species, representing 29 orders. All protein-coding genes initiated with ATG, except for cox1 and nad5, which began with GTG. One extra nucleotide 'C' was present in NADH dehydrogenase subunit 3 (nad3). All tRNA gene sequences have the potential to fold into typical cloverleaf secondary structures. Within the control region, conserved sequences were identified in three domains. Although the conserved blocks, such as ETAS1, ETAS2, CSB1, CSB1-like, and boxes C, D, E, and F, are readily identifiable in the C. livia control region, the typical origin of H-strand replication (O(H)), CSB2 and CSB3 could not be detected. These results provide basic information for phylogenetic analyses of birds, especially Columbiformes species.
e-ISSN	16765680
Journal	Genetics and Molecular Research
Issue Number	2
Volume Number	9
Language	English
Publisher	Fundação de Pesquisas Científicas de Ribeirão Preto
Publisher Date	2010-06-29
Publisher Place	Brazil
Access Restriction	Open
Subject Keyword	Columbidae Genetics Genome, Mitochondrial Animals Dna Primers Dna, Mitochondrial Genome Nadh Dehydrogenase Nucleic Acid Conformation Phylogeny Polymerase Chain Reaction Rna, Ribosomal Rna, Transfer Sequence Analysis, Dna Species Specificity Research Support, Non-u.s. Gov't Discipline Genetics Discipline Molecular Biology Discipline Bioinformatics
Content Type	Text
Resource Type	Article

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