NDLI: Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae.

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Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Oshiro, Guy Deciu, Cosmin Yates, John R. Plouffe, David Winzeler, Elizabeth Ulaszek, Ryan R. Washburn, Michael P. Koller, Antonius
Description	Author Affiliation: Washburn MP ( Proteomics, Torrey Mesa Research Institute, 3115 Merryfield Row, San Diego, CA 92121, USA. michael.washburn@syngenta.com);
Abstract	The mRNA and protein expression in Saccharomyces cerevisiae cultured in rich or minimal media was analyzed by oligonucleotide arrays and quantitative multidimensional protein identification technology. The overall correlation between mRNA and protein expression was weakly positive with a Spearman rank correlation coefficient of 0.45 for 678 loci. To place the data sets in a proper biological context, a clustering approach based on protein pathways and protein complexes was implemented. Protein expression levels were transcriptionally controlled for not only single loci but for entire protein pathways (e.g., Met, Arg, and Leu biosynthetic pathways). In contrast, the protein expression of loci in several protein complexes (e.g., SPT, COPI, and ribosome) was posttranscriptionally controlled. The coupling of the methods described provided insight into the biology of S. cerevisiae and a clustering strategy by which future studies should be based.
ISSN	00278424
e-ISSN	10916490
Journal	Proceedings of the National Academy of Sciences of the United States of America
Issue Number	6
Volume Number	100
Language	English
Publisher	National Academy of Sciences
Publisher Date	2003-03-01
Publisher Place	United States
Access Restriction	Open
Subject Keyword	RNA, Fungal Genetics Metabolism RNA, Messenger Saccharomyces Cerevisiae Proteins Saccharomyces Cerevisiae Amino Acid Sequence Cluster Analysis Data Interpretation, Statistical Gene Expression Profiling Statistics & Numerical Data Genes, Fungal Molecular Sequence Data Oligonucleotide Array Sequence Analysis Peptides Protein Array Analysis Growth & Development Multidisciplinary
Content Type	Text
Resource Type	Article
Subject	Multidisciplinary

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