NDLI: Extensive gene gain associated with adaptive evolution of poxviruses.

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Extensive gene gain associated with adaptive evolution of poxviruses.

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Extensive gene gain associated with adaptive evolution of poxviruses.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Gaut, Brandon S. Mclysaght, Aoife Baldi, Pierre F.
Description	Author Affiliation: McLysaght A ( Department of Ecology, Institute for Genomics and Bioinformatics, School of Information and Computer Science, University of California, Irvine, CA 92697, USA.);
Abstract	Previous studies of genome evolution usually have involved one or two genomes and have thus been limited in their ability to detect the direction and rate of evolutionary change. Here, we use complete genome data from 20 poxvirus genomes to build a robust phylogeny of the Poxviridae and to study patterns of genome evolution. We show that, although there has been little gene order evolution, there are substantial differences between poxviruses in terms of genome content. Furthermore, we show that the rate of gene acquisition is not constant over time and that it has increased in the orthopox lineage (which includes smallpox and vaccinia). We also tested for positive selection on 204 groups of genes and show that a disproportionately high proportion of genes in the orthopox clade are under positive selection. The association of an increased rate of gene gain and positive selection is indicative of adaptive genome evolution. Many of the genes involved in these processes are likely to be associated with host-parasite coevolution.
ISSN	00278424
e-ISSN	10916490
Journal	Proceedings of the National Academy of Sciences of the United States of America
Issue Number	26
Volume Number	100
Language	English
Publisher	National Academy of Sciences
Publisher Date	2003-12-01
Publisher Place	United States
Access Restriction	Open
Subject Keyword	Evolution, Molecular Genes, Viral Genetics Phylogeny Poxviridae Animals Genetic Code Genome, Viral Multigene Family Classification Isolation & Purification Multidisciplinary
Content Type	Text
Resource Type	Article
Subject	Multidisciplinary

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