NDLI: New Avian Paramyxoviruses Type I Strains Identified in Africa Provide New Outcomes for Phylogeny Reconstruction and Genotype Classification

Content Provider	PubMed Central
Author	Almeida, Renata Servan De Hammoumi, Saliha Gil, Patricia Briand, François-xavier Molia, Sophie Nicolas, Gaidet Cappelle, Julien Chevalier, Véronique Gilles, Balança Traoré, Abdallah Grillet, Colette Fridolin, Maminiaina Olivier Guendouz, Samia Marthin, Dakouo Samaké, Kassim Mamy, Bezeid Ould El Diarra, Abbas Chaka, Hassen Goutard, Flavie Thompson, Peter Martinez, Dominique Jestin, Véronique Albina, Emmanuel
Editor	Zhang, Chiyu
Copyright Year	2013
Abstract	Newcastle disease (ND) is one of the most lethal diseases of poultry worldwide. It is caused by an avian paramyxovirus 1 that has high genomic diversity. In the framework of an international surveillance program launched in 2007, several thousand samples from domestic and wild birds in Africa were collected and analyzed. ND viruses (NDV) were detected and isolated in apparently healthy fowls and wild birds. However, two thirds of the isolates collected in this study were classified as virulent strains of NDV based on the molecular analysis of the fusion protein and experimental in vivo challenges with two representative isolates. Phylogenetic analysis based on the F and HN genes showed that isolates recovered from poultry in Mali and Ethiopia form new groups, herein proposed as genotypes XIV and sub-genotype VIf with reference to the new nomenclature described by Diel’s group. In Madagascar, the circulation of NDV strains of genotype XI, originally reported elsewhere, is also confirmed. Full genome sequencing of five African isolates was generated and an extensive phylogeny reconstruction was carried out based on the nucleotide sequences. The evolutionary distances between groups and the specific amino acid signatures of each cluster allowed us to refine the genotype nomenclature.
Related Links	http://dx.doi.org/10.1371/journal.pone.0076413
Starting Page	76413
File Format	PDF
ISSN	19326203
e-ISSN	19326203
Journal	PLoS ONE
Issue Number	10
Volume Number	8
Language	English
Publisher	Public Library of Science
Publisher Date	2013-10-01
Access Restriction	Open
Rights Holder	Public Library of Science
Subject Keyword	Biochemistry, Genetics and Molecular Biology(all) Agricultural and Biological Sciences(all) Medicine(all) Research in Higher Education
Content Type	Text
Resource Type	Article
Subject	Multidisciplinary

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