NDLI: Computational Prediction of Abiotic Stress Responsible MicroRNAs in Vitis vinifera Genome

Content Provider	IEEE Xplore Digital Library
Author	Wei Zhenlin
Copyright Year	2009
Abstract	In this paper, we predicted abiotic stress responsive microRNAs in wine grape genome by homolog search based on computational approach. We successfully predicted 18 grape microRMAs from total 12 query–microRNAs families which chosed from Arabidopsis,Oryza and Populus plants. The MiPred software prediction results, the stem-loop structure feature analysis and pol II promoter prediction results showed that these 18 putative microRNAs are real plant microRNAs. Several known cold, drought stress responding transcript factor binding motifs were identified in these 18 promoter regions. Word spyanalysis displayed 2 remarkable consensus motifs in these promoters with Arabidopsis microRNAs. Four groups of targets were predicted in this work, including CCAAT-binding transcription factor, ring finger transcription factor, sugar metabolism and transport proteins, methyl-transferase and some unknown grape proteins. 3 putative targets of vv-mirRNA169j, 477a and vv-miR393a have reverse transcriptase and leucine-rich repeats (LRRs)ribonuclease inhibitor activity.
Starting Page	228
Ending Page	232
File Size	312593
Page Count	5
File Format	PDF
ISBN	9780769535593
DOI	10.1109/ICECT.2009.101
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2009-02-20
Publisher Place	China
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	microRNAt RNA Pipelines Abiotic stress Genomics Biochemistry Vitis vinifera Stress Proteins Animal structures Computational Prediction Biology computing Bioinformatics Computational biology
Content Type	Text
Resource Type	Article

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in