NDLI: Mining Microsatellites in Paracentrotus.lividus and Aplysia. Californica Unigenes

Content Provider	IEEE Xplore Digital Library
Author	Zhenlin Wei Xiaolin Liu Yaqing Chang
Copyright Year	2009
Abstract	In the present paper, 3325 and 563 EST-SSRs of two sea animal Paracentrotus.lividus and Aplysia. californica was in silico predicted by searching unigene databases, and the SSR length, frequency of different repeat types and compound SSR comprising was analyzed in detailed. The results showed that the SSR abundance of Aplysia unigene was more abundant then that of Paracentrotus. Tri- and dinucleotide motif was the most common motif in Aplysia and Paracentrotus SSRs, respectively. The SSR sizes, compound SSR comprising and motif frequency distribution was significantly different between these two sets of SSRs. The potential cross-species of selected SSRs was evaluated, demonstrating conserved di- or trinucleotide SSRs motifs and polymorphisms in length and nucleotides deleting and replacing exiting between these two species. Taken tighter, the results showed the unigene of Aplysia and Paracentrotus was enrich for developing of cross-species SSR markers and would facilitate evolution and comparative genome research of these two species.
Starting Page	223
Ending Page	227
File Size	236836
Page Count	5
File Format	PDF
ISBN	9780769535593
DOI	10.1109/ICECT.2009.100
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2009-02-20
Publisher Place	China
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Microsatellite Sequences Genomics Aplysia. Californica Biology Paper technology Proteins Databases Frequency Genetics Unigene Bioinformatics Marine animals Paracentrotus.lividus
Content Type	Text
Resource Type	Article

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