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| Content Provider | World Health Organization (WHO)-Global Index Medicus |
|---|---|
| Author | Koundal, Vikas Haq, Qazi Mohd Rizwanul Praveen, Shelly |
| Spatial Coverage | India |
| Description | Country affiliation: India Author Affiliation: Koundal V ( Advanced Centre for Plant Virology, Division of Plant Pathology, Indian Agricultural Research Institute, New Delhi, India.) |
| Abstract | The genome of Cucumber mosaic virus New Delhi strain (CMV-ND) from India, obtained from tomato, was completely sequenced and compared with full genome sequences of 14 known CMV strains from subgroups I and II, for their genetic diversity. Sequence analysis suggests CMV-ND shares maximum sequence identity at the nucleotide level with a CMV strain from Taiwan. Among all 15 strains of CMV, the encoded protein 2b is least conserved, whereas the coat protein (CP) is most conserved. Sequence identity values and phylogram results indicate that CMV-ND belongs to subgroup I. Based on the recombination detection program result, it appears that CMV is prone to recombination, and different RNA components of CMV-ND have evolved differently. Recombinational analysis of all 15 CMV strains detected maximum recombination breakpoints in RNA2; CP showed the least recombination sites. |
| File Format | HTM / HTML |
| ISSN | 00062928 |
| Issue Number | 1-2 |
| Volume Number | 49 |
| e-ISSN | 15734927 |
| Journal | Biochemical Genetics |
| Language | English |
| Publisher | Springer |
| Publisher Date | 2011-02-01 |
| Publisher Place | United States |
| Access Restriction | One Nation One Subscription (ONOS) |
| Subject Keyword | Discipline Molecular Biology Cucumovirus Genetics Recombination, Genetic Amino Acid Sequence Base Sequence Biological Evolution Genes, Viral Genetic Variation India Lycopersicon Esculentum Virology Models, Molecular Molecular Sequence Data Phylogeography Sequence Alignment Sequence Analysis Viral Proteins Journal Article Research Support, Non-u.s. Gov't |
| Content Type | Text |
| Resource Type | Article |
| Subject | Genetics Medicine Biochemistry Molecular Biology Ecology, Evolution, Behavior and Systematics |
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