NDLI: Chryseobacterium rhizoplanae sp. nov., isolated from the rhizoplane environment.

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Chryseobacterium rhizoplanae sp. nov., isolated from the rhizoplane environment.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Kämpfer, Peter McInroy, John A. Glaeser, Stefanie P.
Description	Author Affiliation: Kämpfer P ( Institut für Angewandte Mikrobiologie, Justus-Liebig-Universität Giessen, Heinrich-Buff-Ring 26-32, 35392, Giessen, Germany, peter.kaempfer@umwelt.uni-giessen.de.)
Abstract	A slightly yellow pigmented strain (JM-534(T)) isolated from the rhizoplane of a field-grown Zea mays plant was investigated using a polyphasic approach for its taxonomic allocation. Cells of the isolate were observed to be rod-shaped and to stain Gram-negative. Comparative 16S rRNA gene sequence analysis showed that the isolate had the highest sequence similarities to Chryseobacterium lactis (98.9 %), Chryseobacterium joostei and Chryseobacterium indologenes (both 98.7 %), and Chryseobacterium viscerum (98.6 %). Sequence similarities to all other Chryseobacterium species were 98.5 % or below. The fatty acid analysis of the strain resulted in a Chryseobacterium typical pattern consisting mainly of the fatty acids C15:0 iso, C15:0 iso 2-OH, C17:1 iso ω9c, and C17:0 iso 3-OH. DNA-DNA hybridizations with the type strains of C. lactis, C. joostei, C. viscerum and C. indologenes resulted in values below 70 %. Genomic fingerprinting showed that the isolate was very different to the type strains of these species. Differentiating biochemical and chemotaxonomic properties showed that the isolate JM-534(T) represents a novel species, for which the name Chryseobacterium rhizoplanae sp. nov. (type strain JM-534(T) = LMG 28481(T) = CCM 8544(T) = CIP 110828(T)) is proposed.
File Format	HTM / HTML
ISSN	00036072
Issue Number	2
Volume Number	107
e-ISSN	15729699
Journal	Antonie van Leeuwenhoek
Language	English
Publisher	Springer
Publisher Date	2015-02-01
Publisher Place	Netherlands
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Discipline Microbiology Discipline Immunology Chryseobacterium Classification Isolation & Purification Soil Microbiology Bacterial Typing Techniques Genetics Physiology Cluster Analysis Cytosol Chemistry Dna, Bacterial Dna, Ribosomal Fatty Acids Analysis Molecular Sequence Data Nucleic Acid Hybridization Phylogeny Pigments, Biological Rna, Ribosomal, 16s Sequence Analysis, Dna Zea Mays Growth & Development Journal Article
Content Type	Text
Resource Type	Article
Subject	Medicine Molecular Biology Microbiology

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