NDLI: Rhizosphere and non-rhizosphere bacterial community composition of the wild medicinal plant Rumex patientia.

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Rhizosphere and non-rhizosphere bacterial community composition of the wild medicinal plant Rumex patientia.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Qi, Xiaojuan Wang, Ensi Xing, Ming Zhao, Wei Chen, Xia
Spatial Coverage	China
Description	Author Affiliation: Qi X ( College of Life Science, Jilin University, Changchun 130021, People's Republic of China.)
Abstract	To investigate bacterial communities between rhizosphere and non-rhizosphere soils of the wild medicinal plant Rumex patientia of Jilin, China, small subunit rRNAs (16S rDNA) from soil metagenome were amplified by polymerase chain reaction using primers specific to the domain bacteria and analysed by cloning and sequencing. The relative proportion of bacterial communities in rhizosphere soils was similar to non-rhizosphere soils in five phylogenetic groups (Proteobacteria, Actinobacteria, Acidobacteria, Chloroflexi and Planctomycetes). But there were differences in five other phylogenetic groups (Firmicutes, Bacteroidetes, Gemmatimonadetes, Verrucomicrobia and Unclassified bacteria). Over 97.24 % of the sequenced clones were found to be unique to rhizosphere and non-rhizosphere soils, while 2.76 % were shared by both of them. Our results indicate that there are differences in the composition and proportion of bacterial communities between rhizosphere and non-rhizosphere soils. Furthermore, the unique bacterial clones between rhizosphere and non-rhizosphere soils of the wild medicinal plant R. patientia have obvious differences.
File Format	HTM / HTML
ISSN	09593993
Issue Number	5
Volume Number	28
e-ISSN	15730972
Journal	World Journal of Microbiology and Biotechnology
Language	English
Publisher	Springer
Publisher Date	2012-05-01
Publisher Place	Germany
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Discipline Microbiology Microbiology Rna, Ribosomal, 16s Soil Microbiology Rumex Molecular Sequence Data Phylogeny Biodiversity Sequence Analysis, Dna Journal Article Discipline Biotechnology Rhizosphere Chemistry Dna, Ribosomal Plant Roots Dna, Bacterial China Classification Bacteria Genetics Plants, Medicinal Cluster Analysis
Content Type	Text
Resource Type	Article
Subject	Physiology Medicine Applied Microbiology and Biotechnology Biotechnology

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