NDLI: Transcriptome and metabolome reveal the primary and secondary metabolism changes in Larix gmelinii seedlings under abiotic stress

Content Provider	Springer Nature : BioMed Central
Author	Zhang, Xuting Gao, Xianling Liu, Bin Wang, Juan Shan, Jinyuan Wang, Jiaxiu Zhang, Yanxia Li, Guojing Jia, Yonghong Wang, Ruigang
Abstract	Background Larix gmelinii is an excellent stress resistant coniferous tree species with a wide distribution and important economic and ecological value. However, at seedling stage, L. gmelinii is extremely susceptible to abiotic stresses, and systematic research on the adaptation mechanisms of L. gmelinii seedlings to abiotic stress is still lacking. Results Phenotypic observation and physiological index detection showed that L. gmelinii seedlings wilted with needles withered and yellowish at later stages of drought and salt stress; Under low temperature, the seedlings grew slowly and turned red at later stage. Under all 3 abiotic stresses, the chlorophyll content in seedlings significantly decreased, while the MDA content significantly increased; The activity of SOD and CAT showed a trend of increasing first and then decreasing. Transcriptome analysis revealed that DEGs were mainly involved in carbohydrate and amino acid metabolism, phenylpropanoid biosynthesis, and flavonoid synthesis metabolism. Metabolomic analysis found unique DAMs under 3 stress treatments. The combined analysis of transcriptome and metabolome showed that the changing patterns of DEGs and DAMs in primary and secondary metabolism were consistent: carbohydrate were significantly accumulated under low temperature stress; amino acids showed the most significant changes under salt stress. The variation pattern of secondary metabolism was similar under both drought and salt stress, while anthocyanin accumulation was the most obvious only under low temperature stress. Conclusion Our study provides insightful information about the different mechanisms that L. gmelinii seedlings employ in response to drought, low temperature or salt stress.
Related Links	https://bmcplantbiol.biomedcentral.com/counter/pdf/10.1186/s12870-024-05831-w.pdf
Ending Page	17
Page Count	17
Starting Page	1
File Format	HTM / HTML
ISSN	14712229
DOI	10.1186/s12870-024-05831-w
Journal	BMC Plant Biology
Issue Number	1
Volume Number	24
Language	English
Publisher	BioMed Central
Publisher Date	2024-11-27
Access Restriction	Open
Subject Keyword	Plant Sciences Agriculture Tree Biology Larix gmelinii Seedlings Abiotic stress Transcriptome Metabolome
Content Type	Text
Resource Type	Article
Subject	Plant Science
Journal Impact Factor	4.3/2023
5-Year Journal Impact Factor	5.2/2023

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Transcriptome and metabolome reveal the accumulation of secondary metabolites in different varieties of Cinnamomum longepaniculatum

Transcriptome sequencing and metabolome analysis reveal the molecular mechanism of Salvia miltiorrhiza in response to drought stress

Transcriptome and metabolome analyses reveal the regulatory role of MdPYL9 in drought resistance in apple

Integrative analysis of transcriptome and metabolome reveal molecular mechanism of tolerance to salt stress in rice

Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica)

Transcriptome and metabolome analysis reveals key genes and secondary metabolites of Casuarina equisetifolia ssp. incana in response to drought stress

Metabolome and transcriptome profiles in quinoa seedlings in response to potassium supply

Transcriptome and metabolome analyses of two contrasting sesame genotypes reveal the crucial biological pathways involved in rapid adaptive response to salt stress

Transcriptome and metabolome reveal the primary and secondary metabolism changes in Larix gmelinii seedlings under abiotic stress

Similar Documents

Transcriptome and metabolome reveal the accumulation of secondary metabolites in different varieties of Cinnamomum longepaniculatum

Transcriptome sequencing and metabolome analysis reveal the molecular mechanism of Salvia miltiorrhiza in response to drought stress

Transcriptome and metabolome analyses reveal the regulatory role of MdPYL9 in drought resistance in apple

Integrative analysis of transcriptome and metabolome reveal molecular mechanism of tolerance to salt stress in rice

Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis

Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix gmelinii var. japonica)

Transcriptome and metabolome analysis reveals key genes and secondary metabolites of Casuarina equisetifolia ssp. incana in response to drought stress

Metabolome and transcriptome profiles in quinoa seedlings in response to potassium supply

Transcriptome and metabolome analyses of two contrasting sesame genotypes reveal the crucial biological pathways involved in rapid adaptive response to salt stress

Transcriptome and metabolome reveal the primary and secondary metabolism changes in Larix gmelinii seedlings under abiotic stress