NDLI: Transcriptome profiles of sturgeon lateral line electroreceptor and mechanoreceptor during regeneration

Content Provider	Springer Nature : BioMed Central
Author	Wang, Jian Lu, Chengcheng Zhao, Yifan Tang, Zhijiao Song, Jiakun Fan, Chunxin
Abstract	Background The electrosensory ampullary organs (AOs) and mechanosensory neuromasts (NMs) found in sturgeon and some other non-neopterygian fish or amphibians are both originated from lateral line placodes. However, these two sensory organs have characteristic morphological and physiological differences. The molecular mechanisms for the specification of AOs and NMs are not clearly understood. Results We sequenced the transcriptome for neomycin treated sturgeon AOs and NMs in the early regeneration stages, and de novo assembled a sturgeon transcriptome. By comparing the gene expression differences among untreated AOs, NMs and general epithelia (EPs), we located some specific genes for these two sensory organs. In sturgeon lateral line, the voltage-gated calcium channels and voltage-gated potassium channels were predominant calcium and potassium channel subtypes, respectively. And by correlating gene expression with the regeneration process, we predicated several candidate key transcriptional regulation related genes might be involved in AOs and NMs regeneration. Conclusions Genes with specific expression in the two lateral line sensory organs suggests their important roles in mechanoreceptor and electroreceptor formation. The candidate transcriptional regulation related genes may be important for mechano- and electro- receptor specification, in a “dosage-related” manner. These results suggested the molecular basis for specification of these two sensory organs in sturgeon.
Related Links	https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/s12864-020-07293-4.pdf
Ending Page	14
Page Count	14
Starting Page	1
File Format	HTM / HTML
ISSN	14712164
DOI	10.1186/s12864-020-07293-4
Journal	BMC Genomics
Issue Number	1
Volume Number	21
Language	English
Publisher	BioMed Central
Publisher Date	2020-12-07
Access Restriction	Open
Subject Keyword	Life Sciences Microarrays Proteomics Animal Genetics and Genomics Microbial Genetics and Genomics Plant Genetics and Genomics Mechanosensory Electrosensory Regeneration Specification Sturgeon
Content Type	Text
Resource Type	Article
Subject	Biotechnology Genetics
Journal Impact Factor	3.5/2023
5-Year Journal Impact Factor	4.1/2023

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

MicroRNA transcriptome profiles during swine skeletal muscle development

De novo transcriptome sequencing of axolotl blastema for identification of differentially expressed genes during limb regeneration

Characterization of phytohormone and transcriptome profiles during protocorm-like bodies development of Paphiopedilum

Skin transcriptome profiles associated with coat color in sheep

Global transcriptome profiles of Camellia sinensis during cold acclimation

Transcriptome analysis reveals high concentration of resveratrol promotes lipid synthesis and induces apoptosis in Siberian sturgeon (Acipenser baerii)

Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

A crustacean annotated transcriptome (CAT) database

Transcriptome profiles of sturgeon lateral line electroreceptor and mechanoreceptor during regeneration

Similar Documents

Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon

MicroRNA transcriptome profiles during swine skeletal muscle development

De novo transcriptome sequencing of axolotl blastema for identification of differentially expressed genes during limb regeneration

Characterization of phytohormone and transcriptome profiles during protocorm-like bodies development of Paphiopedilum

Skin transcriptome profiles associated with coat color in sheep

Global transcriptome profiles of Camellia sinensis during cold acclimation

Transcriptome analysis reveals high concentration of resveratrol promotes lipid synthesis and induces apoptosis in Siberian sturgeon (Acipenser baerii)

Differential expression of conserved and novel microRNAs during tail regeneration in the lizard Anolis carolinensis

A crustacean annotated transcriptome (CAT) database

Transcriptome profiles of sturgeon lateral line electroreceptor and mechanoreceptor during regeneration