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Customized multiplexing SNP panel for Korean-specific DNA phenotyping in forensic applications

Content Provider	Springer Nature Link
Author	Lim, Seri Youn, Jong Pil Hong, Seungbeom Choi, Dongho Moon, Seohyun Kim, Wook Han, Myunsoo Hwang, Seung Yong
Copyright Year	2016
Abstract	Due to the recent growth of the alien population in Korea, tracking the ethnic origin of human specimens has gained importance in genetic forensics. To address this issue, we developed a method to analyze single nucleotide polymorphisms (SNPs) based on next-generation sequencing (NGS) technology, which is now being used for personal identification in forensics. We designed a panel of 153 Korean-specific high-performance multiplexed SNPs and performed NGS using 233 DNA samples collected from eight different ethnic groups around the world. Eight Korean-specific genetic markers (rs28777, rs1010872, rs6043841, rs6034433, rs885479, rs2503107, rs4530059, and rs214955) that were screened showed significant variability among the ethnic groups. Three markers were novel SNPs that were absent from our multiplexed SNP panel, and two markers were associated with specific phenotypes. Our high-performance multiplexed SNP panel allows efficient screening of Korean-specific SNP alleles in populations that are genetically similar to the Korean population (e.g., Japanese and northeast Asians including Chinese and Eurasians), which will be useful for personal identification, paternity testing, and forensic investigations.
Starting Page	723
Ending Page	732
Page Count	10
File Format	PDF
ISSN	19769571
Journal	Genes & Genomics
Volume Number	39
Issue Number	7
e-ISSN	20929293
Language	English
Publisher	The Genetics Society of Korea
Publisher Date	2017-05-31
Publisher Place	Seoul
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Genomic variation Forensic DNA identification Massively parallel sequencing Ion PGM Multiplexed SNP panel Microbial Genetics and Genomics Plant Genetics & Genomics Animal Genetics and Genomics Human Genetics
Content Type	Text
Resource Type	Article
Subject	Genetics Biochemistry Molecular Biology

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