NDLI: Web Tools for Rice Transcriptome Analyses

Content Provider	Springer Nature Link
Author	Jung, Ki Hong Jeon, Jong Seong An, Gynheung
Copyright Year	2011
Abstract	Gene expression databases provide profiling data for the expression of thousands of genes to researchers worldwide. Oligonucleotide microarray technology is a useful tool that has been employed to produce gene expression profiles in most species. In rice, there are five genome-wide DNA microarray platforms: NSF 45K, BGI/Yale 60K, Affymetrix, Agilent Rice 44K, and NimbleGen 390K. Presently, more than 1,700 hybridizations of microarray gene expression data are available from public microarray depositing databases such as NCBI gene expression omnibus and Arrayexpress at EBI. More processing or reformatting of public gene expression data is required for further applications or analyses. Web-based databases for expression meta-analyses are useful for guiding researchers in designing relevant research schemes. In this review, we summarize various databases for expression meta-analyses of rice genes and web tools for further applications, such as the development of co-expression network or functional gene network.
Starting Page	65
Ending Page	80
Page Count	16
File Format	PDF
ISSN	12269239
Journal	Journal of Plant Biology
Volume Number	54
Issue Number	2
e-ISSN	18670725
Language	English
Publisher	Springer-Verlag
Publisher Date	2011-01-26
Publisher Place	New York
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Database Expression profile Network Rice Web tool Plant Systematics/Taxonomy/Biogeography Plant Ecology Plant Breeding/Biotechnology Plant Genetics & Genomics Plant Sciences
Content Type	Text
Resource Type	Article
Subject	Plant Science

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