NDLI: Diversity Analysis of Bacterial Community from Permafrost Soil of Mo-he in China

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Indian Journal of Microbiology : Volume 53

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Diversity Analysis of Bacterial Community from Permafrost Soil of Mo-he in China

Content Provider	Springer Nature Link
Author	Dan, Dong Zhang, Dian peng Liu, Wei cheng Lu, Cai ge Zhang, Tao tao
Copyright Year	2013
Abstract	The permafrost soil of Mo-he in Northeast China presents a typical cold environment colonized by psychrophilic microorganisms. This study is aimed at assessing the bacterial communities of permafrost soil of Mo-he in China by sequencing the 16S rRNA genes and Mothur analysis. PCR products with universal 16S rRNA gene primers were cloned and partially sequenced, and bacterial identification at the species was performed by comparative analysis with the GenBank/EMBL/DDBJ database. A total of 266 clones were obtained with the average length of 1,050 bp. Mothur analysis showed that the coverage value of clone library was 53.78 %, Shannon diversity (H) was 4.03, Simpson diversity value was 0.018, and 74 operational taxonomic units were generated. Through phylogenetic assignment using BLASTN by more than 97 % similarity, a total of 87 tentative taxa were identified. The majority of bacterial sequences recovered in this study belonged to the Acidobacteria, Proteobacteria, Verrucomicrobia, Bacteroidetes, Chloroflexi and Chlorobi. Among them, Acidobacteria are dominant community, accounting for 30.1 % of total bacteria, followed by Proteobacteria which accounted for 22.2 %. This result reflected the acidic characteristics of the permafrost soil of which pH value was 6.0. Our study indicated that the permafrost soil of Mo-he in China has a high diversity of bacteria and represents a vast potential resource of novel bacteria. As far as we knew, this is the first report on bacterial diversity of permafrost soil of Mo-he in China.
Starting Page	111
Ending Page	113
Page Count	3
File Format	PDF
ISSN	00468991
Journal	Indian Journal of Microbiology
Volume Number	54
Issue Number	1
e-ISSN	09737715
Language	English
Publisher	Springer India
Publisher Date	2013-08-02
Publisher Institution	Association of Microbiologists of India
Publisher Place	India
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Bacterial diversity Mo-he Permafrost soil Microbiology Medical Microbiology
Content Type	Text
Resource Type	Article
Subject	Microbiology

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