NDLI: Sequence variability analysis on major histocompatibility complex class II DRB alleles in three felines

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Sequence variability analysis on major histocompatibility complex class II DRB alleles in three felines

Content Provider	Springer Nature Link
Author	Wang, Qian Wu, Xiaobing Yan, Peng Zheng, Shuai
Copyright Year	2008
Abstract	The variation of the exon 2 of the major histo-compatibility complex (MHC) class II gene DRB locus in three feline species were examined on clouded leopard (Neofelis nebulosa), leopard (Panthera pardus) and Amur tiger (Panthera tigris altaica). A pair of degenerated primers was used to amplify DRB locus covering almost the whole exon 2. Exon 2 encodes the β1 domain which is the most variable fragments of the MHC class II molecule. Single-strand conformational polymorphism (SSCP) analysis was applied to detect different MHC class II DRB haplotypes. Fifteen recombinant plasmids for each individual were screened out, isolated, purified and sequenced finally. Totally eight distinct haplotypes of exon 2 were obtained in four individuals. Within 237 bp nucleotide sequences from four samples, 30 variable positions were found, and 21 putative peptide-binding positions were disclosed in 79 amino acid residues. The ratio of nonsynonymous substitutions (d $_{ N }$) was much higher than that of synonymous substitutions (d $_{ S }$), which indicated that balancing selection probably maintain the variation of exon 2. MEGA neighbor joining (NJ) and PAUP maximum parsimony (MP) methods were used to reconstruct phylogenetic trees among species, respectively. Results displayed a more close relationship between leopard and tiger; however, clouded leopard has a comparatively distant relationship form the other two.
Starting Page	55
Ending Page	62
Page Count	8
File Format	PDF
ISSN	16733509
Journal	Frontiers in Biology
Volume Number	3
Issue Number	1
e-ISSN	16733622
Language	English
Publisher	Higher Education Press
Publisher Date	2008-01-01
Publisher Institution	Chinese Universities
Publisher Place	Beijing
Access Restriction	Subscribed
Subject Keyword	major histocompatibility complex (MHC) DRB locus exon 2 feline variability Life Sciences
Content Type	Text
Resource Type	Article
Subject	Ecology Genetics Ecology, Evolution, Behavior and Systematics Biotechnology

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