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A precise equation of equilibrium of four steps of TBP binding with the TATA box for prognosis of phenotypic manifestation of mutations

Content Provider	Springer Nature Link
Author	Pomarenko, P. M. Suslov, V. V. Savinkova, L. K. Pomarenko, M. P. Kolchav, N. A.
Copyright Year	2010
Abstract	Among the central events of transcription initiation of TATA-containing genes in eukaryotes are the recognition and binding of the TATA box by the TATA-binding protein (TBP) to start the preinitiation complex formation on nucleosomal DNA. Using the equation of equilibrium for step-by-step TBP/TATA binding, we have analyzed 69 experimental datasets for the characteristics of biologically important features altered by TATA-box mutations. Among these features, the TBP/TATA-complex parameters, the transcription level, the activity of gene products, yeast colony growth at a dose of growth inhibitor (phenotype), and the heterogeneity of the response of a population to unspecific environmental stress have been described. Significant correlations were found between in silico prediction for TBP/TATA affinity and experimental data for in vivo and in vitro test systems based on 15 cell types of 19 species, RNA polymerases II and III, and natural, recombinant or mutant TBP. Such an invariant impact of the step-by-step TBP/TATA binding on the biological activity of complex systems, from a molecule to a population, might be due to the fact that TBP/TATA-complex formation precedes specific steps of transcription machinery assembly, which provide the multivariant jigsaw puzzle according to the expression pattern of each eukaryotic gene.
Starting Page	358
Ending Page	369
Page Count	12
File Format	PDF
ISSN	00063509
Journal	Biophysics
Volume Number	55
Issue Number	3
e-ISSN	15556654
Language	English
Publisher	SP MAIK Nauka/Interperiodica
Publisher Date	2010-10-06
Publisher Place	Dordrecht
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	TATA box mutation prediction gene biological activity correlation Biophysics and Biological Physics
Content Type	Text
Resource Type	Article
Subject	Biophysics

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Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition speci¢cities (1994)

The TATA-Box-Binding Protein (TBP) of Halobacterium Salinarum. Cloning of the tbp Gene, Heterologous Production of TBP and Folding of TBP into a Native Conformation

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A step-by-step model of TBP/TATA box binding allows predicting human hereditary diseases by single nucleotide polymorphism

The small nuclear rna-activating protein 190 myb dna binding domain stimulates tata box-binding protein-tata.

Inherent DNA curvature and flexibility correlate with TATA box functionality

Nearest-neighbor non-additivity versus long-range non-additivity in TATA-box structure and its implications for TBP-binding mechanism

Mutations on the DNA binding surface of TBP discriminate between yeast TATA and TATA-less gene transcription (2014)

Prediction of the affinity of the TATA-binding protein to TATA boxes with single nucleotide polymorphisms

A precise equation of equilibrium of four steps of TBP binding with the TATA box for prognosis of phenotypic manifestation of mutations

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Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition speci¢cities (1994)

The TATA-Box-Binding Protein (TBP) of Halobacterium Salinarum. Cloning of the tbp Gene, Heterologous Production of TBP and Folding of TBP into a Native Conformation

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A precise equation of equilibrium of four steps of TBP binding with the TATA box for prognosis of phenotypic manifestation of mutations