NDLI: Genomic sequencing and analysis of Chilli ringspot virus, a novel potyvirus

Content Provider	Springer Nature Link
Author	Gong, Dian Wang, Jian Hua Lin, Zhan Song Zhang, Shao Yan Zhang, Yu Liang Yu, Nai Tong Xiong, Zhongguo Liu, Zhi Xin
Copyright Year	2011
Abstract	Chilli ringspot virus (ChiRSV), a novel potyvirus, was recently found in Hainan, China with high prevalence. The genomic sequence of the ChiRSV-HN/14 isolate was determined by sequencing overlapping cDNA segments generated by reverse transcription polymerase chain reaction with degenerate and/or specific primers. ChiRSV genome (GenBank Acc. no. JN008909) comprised of 9,571 nucleotides (nt) excluding the 3′-terminal poly (A) tail and contained a large open reading frame of 9,240 nt encoding a large polyprotein of 3,079 amino acids with predicted Mr of 349.1 kDa. A small, overlapping PIPO coding region was also found to span from nt 2,913 to 3,095, with a capacity to encode a peptide of 60 amino acids. ChiRSV shares sequence identities of only 48.5–65.4 and 42.9–68.7% with closely related potyviruses at the nucleotide and the amino acid levels, respectively. Phylogenetic analysis of the genomic sequences provided further evidence that ChiRSV is a distinct species of the Potyvirus genus. ChiRSV-HN/14 is most closely related to Tobacco vein banding mosaic virus and two other pepper-infecting potyviruses.
Starting Page	439
Ending Page	444
Page Count	6
File Format	PDF
ISSN	09208569
Journal	Virus Genes
Volume Number	43
Issue Number	3
e-ISSN	1572994X
Language	English
Publisher	Springer US
Publisher Date	2011-08-17
Publisher Place	Boston
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	ChiRSV Potyvirus Genome Phylogeny Motif Plant Sciences Virology Medical Microbiology
Content Type	Text
Resource Type	Article
Subject	Virology Genetics Medicine Molecular Biology

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