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Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates

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Functional & Integrative Genomics : Volume 8, Issue 3, August 2008

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Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates

Content Provider	Springer Nature Link
Author	Kaur, Parminder Larson, Steven R. Shaun Bushman, B. Wang, Richard R. C. Mott, Ivan W. Hole, David Thimmapuram, Jyothi Gong, George Liu, Lei
Copyright Year	2008
Abstract	Leymus cinereus and L. triticoides are large caespitose and rhizomatous perennial grasses, respectively. Previous studies detected quantitative trait loci (QTL) controlling rhizome spreading near the viviparous1 (vp1) gene markers on linkage groups LG3a and LG3b in two families, TTC1 and TTC2, derived from Leymus triticoides × Leymus cinereus hybrids. The wheat tiller inhibition gene (tin3) is located on Triticum monococcum chromosome 3 AmL near vp1. Triticeae group 3 is reportedly collinear with rice chromosome 1, which also contains the maize barren stalk1 and rice lax branching orthogene near vp1. However, previous studies lacked cross-species markers for comparative mapping and showed possible rearrangements of Leymus group 3 in wheat-Leymus racemosus chromosome addition lines. Here, we developed expressed sequence tag (EST) markers from Leymus tiller and rhizomes and mapped sequences aligned to rice chromosome 1. Thirty-eight of 44 informative markers detected loci on Leymus LG3a and LG3b that were collinear with homoeologous sequences on rice chromosome 1 and syntenous in homoeologous group 3 wheat-Leymus and wheat-Thinopyrum addition lines. A SCARECROW-like GRAS-family transcription factor candidate gene was identified in the Leymus EST library, which aligns to the Leymus chromosome group 3 growth habit QTL and a 324-kb rice chromosome 1 region thought to contain the wheat tin3 gene.
Starting Page	375
Ending Page	386
Page Count	12
File Format	PDF
ISSN	1438793X
Journal	Functional & Integrative Genomics
Volume Number	8
Issue Number	4
e-ISSN	14387948
Language	English
Publisher	Springer-Verlag
Publisher Date	2008-06-10
Publisher Place	Berlin, Heidelberg
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Addition lines Growth habit Comparative genomics Tillers Rhizomes Perennial Triticeae Biochemistry Biotechnology Molecular Medicine Cancer Research Cell Biology
Content Type	Text
Resource Type	Article
Subject	Genetics Medicine

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Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates

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Phylogenomic Analyses of the BARREN STALK1/LAX PANICLE1 (BA1/LAX1) Genes and Evidence for Their Roles During Axillary Meristem Development

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Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates