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High-throughput SNP genotyping on universal bead arrays.
| Content Provider | Semantic Scholar |
|---|---|
| Author | Shen, Richard Fan, Jian-Bing Campbell, Derek Chang, Weihua Chen, Jing Chun Doucet, Dennis Yeakley, J. Bibikova, Marina Garcia, Eliza Wickham McBride, Celeste Steemers, Frank García, Francisco Kermani, Bahram Ghaffarzadeh Gunderson, Kevin L. Oliphant, Arnold |
| Copyright Year | 2005 |
| Abstract | We have developed a flexible, accurate and highly multiplexed SNP genotyping assay for high-throughput genetic analysis of large populations on a bead array platform. The novel genotyping system combines high assay conversion rate and data quality with >1500 multiplexing, and Array of Arrays formats. Genotyping assay oligos corresponding to specific SNP sequences are each linked to a unique sequence (address) that can hybridize to its complementary strand on universal arrays. The arrays are made of beads located in microwells of optical fiber bundles (Sentrix Array Matrix) or silicon slides (Sentrix BeadChip). The optical fiber bundles are further organized into a matrix that matches a 96-well microtiter plate. The arrays on the silicon slides are multi-channel pipette compatible for loading multiple samples onto a single silicon slide. These formats allow many samples to be processed in parallel. This genotyping system enables investigators to generate approximately 300,000 genotypes per day with minimal equipment requirements and greater than 1.6 million genotypes per day in a robotics-assisted process. With a streamlined and comprehensive assay, this system brings a new level of flexibility, throughput, and affordability to genetic research. |
| Starting Page | 70 |
| Ending Page | 82 |
| Page Count | 13 |
| File Format | PDF HTM / HTML |
| DOI | 10.1016/j.mrfmmm.2004.07.022 |
| PubMed reference number | 15829238 |
| Journal | Medline |
| Volume Number | 573 |
| Issue Number | 1-2 |
| Alternate Webpage(s) | http://www.biostat.jhsph.edu/~iruczins/snp/extra/05.07.20/shen_2005.pdf |
| Alternate Webpage(s) | https://doi.org/10.1016/j.mrfmmm.2004.07.022 |
| Journal | Mutation research |
| Language | English |
| Access Restriction | Open |
| Content Type | Text |
| Resource Type | Article |
