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eu Partnership for Advanced Computing in Europe Optimization and Scaling of Multiple Sequence Alignment Software ClustalW on Intel Xeon Phi
| Content Provider | Semantic Scholar |
|---|---|
| Author | Borovska, Plamenka Gancheva, Veska Tsvetanov, Simeon |
| Copyright Year | 2014 |
| Abstract | This work is aimed to investigate and to improve the performance of multiple sequence alignment software ClustalW on the test platform EURORA at CINECA, for the case study of the influenza virus sequences. The objective is code optimization, porting, scaling and performance evaluation of parallel multiple sequence alignment software ClustalW for Intel Xeon Phi (the MIC architecture). For this purpose a parallel multithreaded optimization including OpenMP has been implemented and verified. The experimental results show that the hybrid parallel implementation utilizing MPI and OpenMP provides considerably better performance than the original code. |
| File Format | PDF HTM / HTML |
| Alternate Webpage(s) | http://www.prace-ri.eu/IMG/pdf/wp138.pdf |
| Language | English |
| Access Restriction | Open |
| Content Type | Text |
| Resource Type | Article |