NDLI: Genetic Analysis of West Nile Virus Isolates from an Outbreak in Idaho, United States, 2006–2007

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Genetic Analysis of West Nile Virus Isolates from an Outbreak in Idaho, United States, 2006–2007

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Genetic Analysis of West Nile Virus Isolates from an Outbreak in Idaho, United States, 2006–2007

Content Provider	MDPI
Author	Grinev, Andriyan Chancey, Caren Añez, Germán Ball, Christopher Winkelman, Valerie Williamson, Phillip Foster, Gregory Stramer, Susan Rios, Maria
Abstract	West Nile virus (WNV) appeared in the U.S. in 1999 and has since become endemic, with yearly summer epidemics causing tens of thousands of cases of serious disease over the past 14 years. Analysis of WNV strains isolated during the 2006–2007 epidemic seasons demonstrates that a new genetic variant had emerged coincidentally with an intense outbreak in Idaho during 2006. The isolates belonging to the new variant carry a 13 nt deletion, termed ID-Δ13, located at the variable region of the 3′UTR, and are genetically related. The analysis of deletions and insertions in the 3′UTR of two major lineages of WNV revealed the presence of conserved repeats and two indel motifs in the variable region of the 3′UTR. One human and two bird isolates from the Idaho 2006–2007 outbreaks were sequenced using Illumina technology and within-host variability was analyzed. Continued monitoring of new genetic variants is important for public health as WNV continues to evolve.
File Size	741376
Ending Page	4506
Page Count	21
Starting Page	4486
File Format	PDF
e-ISSN	16604601
DOI	10.3390/ijerph10094486
Journal	International Journal of Environmental Research and Public Health
Issue Number	9
Volume Number	10
Language	English
Publisher Date	2013-09-23
Access Restriction	Open
Subject Keyword	Flavivirus West Nile virus genetic variation WNV evolution indel motifs next generation sequencing
Content Type	Text
Resource Type	Article

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