NDLI: The Wavelet Transformation for Temporal Gene Expression Analysis

Content Provider	IEEE Xplore Digital Library
Author	Song, J.Z. Duan, K.M. Surette, M.
Copyright Year	2005
Description	Author affiliation: Department of Microbiology and Infectious Diseases, University of Calgary (Song, J.Z.)
Abstract	A variety of high throughput methods have made it possible to generate detailed temporal expression data for a single gene or large numbers of genes. Methods for analysis of these large data sets can be problematic. One challenge is the comparison of temporal expression data obtained from different growth conditions where the patterns of expression may be shifted in time. We propose the use of wavelet analysis to transform the data obtained under different growth conditions to permit comparison of expression patterns from experiments that have time shifts or delays. We demonstrate this approach using detailed temporal data for a single bacterial gene obtained under 72 different growth conditions. This general strategy for can be applied in the analysis of data sets of thousands of genes during cellular differentiation and response.
Starting Page	148
Ending Page	148
File Size	318396
Page Count	1
File Format	PDF
ISBN	0769523722
ISSN	10636919
DOI	10.1109/CVPR.2005.540
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2005-09-21
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Wavelet transforms Biochemical analysis Delay effects Hidden Markov models Production Wavelet analysis Throughput Gene expression Data mining Pattern analysis
Content Type	Text
Resource Type	Article
Subject	Computer Vision and Pattern Recognition Software

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1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
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