NDLI: A system biology approach to robustness analysis of circadian rhythm

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2014 6th International Symposium on Communications, Control and Signal Processing (ISCCSP)

2012 5th International Symposium on Communications, Control and Signal Processing

2010 4th International Symposium on Communications, Control and Signal Processing (ISCCSP)

2008 3rd International Symposium on Communications, Control and Signal Processing

First International Symposium on Control, Communications and Signal Processing, 2004.

2004 First International Symposium on Control, Communications and Signal Processing. (IEEE Cat. No.04EX814)

2004 First International Symposium on Control, Communications and Signal Processing

Invitation from the general co-chairs

Technical program overview

Technical Program Committee

List of reviewers

Table of contents

Multimedia/multimodal signal processing, analysis, and understanding

Supervisory control of uncertain underactuated vehicles

Stabilizing a nonlinear system with limited information

Design of a digital linear controller for a single-phase UPF two-stage boost rectifier using the dSPACE tool of Matlab/Simulink

Sliding mode control applied to mobile robot: continuous-time and discrete-time cases

Advances in logic controllers design

An interval point duration temporal logic for the modeling of real time systems

Design of an image distortion measure using spatial/spatial-frequency analysis

Use of fractional autocorrelation in efficient detection of pulse compression radar signals

A new method for speech denoising and speaker verification using subband architecture

Time-frequency analysis of laser Doppler flowmetry signals computed thanks to the S-transform on healthy subjects and on patients suffering from peripheral arterial occlusive diseases

IF estimation using empirical mode decomposition and nonlinear Teager energy operator

Contrast functions for blind source separation based on time frequency distributions

Design of mobile radio transceiver RFICs: current status and future trends

Algorithmic methods for bottom-up generation of system-level RF macromodels

Analysis of phase noise effects in multi-user OFDM

BER performance degradation of MC-DS-CDMA systems jointly affected by transmitter HPA and receiver CFO in frequency selective fading channels

Advanced receiver architectures and I/Q signal processing

Blind I/Q imbalance parameter estimation and compensation in low-IF receivers

Adaptative algorithm for supporting multi-constrained QoS for real-time and multimedia applications

Video error concealment using spatio-temporal interpolation with snakes

Trailing artifact avoidance for low bit-rate block-based video coders

Estimation of packet loss effects on video quality

Digital rights management for visual content in mobile applications

Images and image sequences analysis and coding based on rate distribution of embedded zerotree wavelet symbols

New Java mobile handset browser to support both WML and HTML

IDA - iterative data analysis applied to color vector quantization

Video signal generation using a new interfacing technique for computer system

Parametric modelling of a twin rotor system using genetic algorithms

Mobile robots path generation using memory neuron networks

Convergence analysis of a nonlinear predictive adaptive controller

Decoupling and synthesis of non linear systems with input multiplicities

Synchronization of two Rossler chaotic systems via adaptive backstepping with modular design

Recursive backstepping stabilization of a wheeled mobile robot

An authorization and access control model for workflow

Genetic algorithms for multiobjective predictive control

Scan and wait combining (SWC): a switch and examine strategy with a performance-delay tradeoff

Performance analysis of multiuser selection diversity with adaptive transmission

8-PSK combined to regular and irregular symbol based turbo codes

On the robustness of an iterative maximum a posteriori channel estimation for Alamouti's space-time transmit diversity

Trading rate versus diversity in space-time-frequency block coding schemes

Low-complexity equalizers for MIMO frequency selective channels

Advanced error correcting coding techniques and iterative decoding

On robustness of periodic trajectories in circadian systems

A system biology approach to robustness analysis of circadian rhythm

Intrinsic noise rejection in gene networks by regulation of stability

A hybrid automaton model of the motor control system

Noise reduction by feedback in gene regulation

Distributed space-time communication for sensor networks

Optimal reconstruction of Gauss Markov field in large sensor networks

Jointly optimized quantization and time delay estimation for sensor networks

Collision resolution in pseudocellular WLANs with beamforming

Non stationary stochastic models for forecasting QoS in ad hoc networks for real-time service support

Signal recovery from partial fractional Fourier transform information

A Fourier domain method for object reconstruction from in-line Fresnel holograms

Simulation of scalar optical diffraction between arbitrarily oriented planes

Experimental setup for underwater artifact identification and signal analysis using wavelets

Fractional Talbot images of periodic gratings with a certain symmetry

A heart sound segmentation and feature extraction algorithm using wavelets

Pitch synchronous wavelet based fetal ECG extraction

Spatial variability analysis of ECG mapping: a shape approach

Enhancement and GIF filtering for the improvement of the mammographique image

Programmable current source dedicated to a cochlear implant

Transcutaneous electrical nerve stimulation for pain relief

Computer-aided diagnosis of mammographic images

Analysis of the electrocardiogram signal by the lifting scheme

CMOS ASK system modulation dedicated to cochlear prosthesis

Flexible signal generator for facial nerve detection

Fractal anisotropy measurement of bone texture radiographs

Estimation of the angle of arrival and the angular spread of a diffuse source in azimuth and sight

A robust RBF neural net Bayesian estimator for channel equalization

Adaptive PLL performances analysis for digital transmission context

Application of neural networks to radar signal detection in K-distributed clutter

Multicomponent chirp interference estimation for communication systems in impulsive /spl alpha/-stable noise environment

Run length encoder implementation on TMS320C50 fixed point DSP

Broadband microstrip patch antenna with pin loading for wireless communications

A simple IQ-regeneration technique for six-port communication receivers

PAPR analysis and reduction in WPDM systems

Novel technique using single pole amplifier in sinewave oscillator

Performance analysis for blind I/Q imbalance compensation in low-IF receivers

Annular microstrip antenna in multilayered media containing uniaxial anisotropic dielectrics

Use of experience plans optimisation method to design CMOS low noise amplifier for UMTS application

A software simulation testbed for multi-user detection based on modified Hopfield network

Resonance characteristics of circular microstrip antennas using moment method and various current representations

A new design approach for ODMA systems

Resonant frequency of a rectangular microstrip antenna depends of the dielectric substrate parameters using the various types of current expansion function

Wireless communications at a crossroads

Efficiency, fairness and friendliness evaluation of TFRC and ARC rate-based congestion control

An analytical model of a new packet marking algorithm for TCP flows: preliminary insights

Distributed algorithms for multicast tree construction

DARED: a double-feedback AQM technique for routers supporting real-time multimedia traffic in a best-effort scenario

Active queue management stability in multiple bottleneck networks

Dynamic bandwidth allocation via distributed predictive control in satellite networks

Detection and compensation of narrowband interference for wireline multi-carrier modulation systems

Concepts for DMT transmission systems with dynamic carrier allocation

Low-latency multicarrier transmission using generalized DMT modulation

A new phenomenon observed in connection with determining the FEQ of DMT transceivers with insufficient guard interval

A systematic algorithm for the design of multiplierless lattice wave digital filters

Optimization of extrapolated impulse response filters using semi-infinite programming

A robust speech recognition system using FRM running spectrum filtering

MILP design of frequency-response masking FIR filters with few SPT terms

Recognition of piano notes with the aid of FRM filters

An algorithm for the design of multiplierless two-channel perfect reconstruction orthogonal lattice filter banks

Complexity reduction of high-speed FIR filters using micro-genetic algorithm

Parallelization of an image compression and decompression algorithm based on 1D wavelet transformation

Lossless color and multispectral images coding with inter-band compensated prediction

An approach for image sonification

Hyperspectral image compression through spectral clustering

Artificial neural network-based face recognition

Motion blurred image deconvolution with anisotropic regularization

Handwritten characters recognition based on SKCS-polyline and hidden Markov model (HMM)

Scanned maps processing using wavelet domain hidden Markov models

Real-time implementation of an adaptive nonlinear control for synchronous machines

An advanced Park's vectors approach for rotor cage diagnosis

On a new approach in discrete-time sliding mode control

Discrete control by sliding mode of a photovoltaic system

Discussion on synthesis of non linear spatio-temporal systems with unstable zeros dynamics

Design and analysis of fuzzy controllers for DC-DC converters

Neural networks and fuzzy nonlinear controllers applied to an induction machine

Field weakening nonlinear control of a separately excited DC motor

Prevention of the interruptions due to the phenomena of the electric insulators pollution

Signal processing of vibrations for condition monitoring of an induction motor

Design of a digital front-end transmitter for OFDM-WLAN systems using FPGA

Experimental characterization of a direct-sequence spread-spectrum optical wireless system for in-house communications

Absolute effects of aggregation of self-similar traffic on quality of service parameters

A generalized Rice channel for modeling mobile satellite link

Wireless broadband network design issues with regard to IEEE 802.11b wireless transmission

Network performance evaluation using traffic measurements

For a GSM network tuning

A simple watermarking system

Throughput analysis of IEEE 802.11 DCF under finite load traffic

Challenges of non-linear identification

Improved basic planar algorithm of vehicle guidance through waypoints by the line of sight

Evaluation of hydrodynamics parameters of a UUV. A preliminary study

Comparison of non linear identification methods for underwater vehicles

Graphical simulators for AUV development

Dynamic path planning for mobile robots using fractional potential field

Linear precoding under iterative processing for multiple antenna channels

IRA code design for MIMO systems with iterative receivers

Signal processing with factor graphs: examples

Towards Shannon-theoretic limits on wireless time-varying channels

On cross-layer adaptivity and optimization for multimedia CDMA mobile wireless networks

Adaptive source and channel re-encoding to maximize tandem link performance

Voice transmission over 802.11 wireless networks using analysis-by-synthesis packet classification

Information theory at multiple time-scales: the case of scheduling

Incremental and decremental redundancy in turbo source-channel coding

Recurrent neural network with both side input context dependence for text-to-phoneme mapping

Empirical mode decomposition of voiced speech signal

A new approach for speech modeling based on model reduction

A method to classify emotional expressions of text and synthesize speech

Experimental study of the HMMs effect on the word recognition performance

Acoustic signals analysed by a parametric and non parametric time-frequency representations

Trispectral analysis of Arabic speech signal of a child with defective audition based cumulants

Use of coherence in wavelet and multiwavelet domain for microphone array speech enhancement

Text independent speaker recognition using the Mel frequency cepstral coefficients and a neural network classifier

A time frequency representations of speech signals based on a modeling of the auditory system: the gammagrams

Speech analysis using wavelet transforms dedicated to cochlear prosthesis stimulation strategy

Exact BER computation for the cross 32-QAM constellation

Modelling microstructured optical fibres

The rank of /spl Zopf//sub 4/ cyclic codes of length 2/sup e/

Performance enhancement of relay-assisted communications via binary feedback

Evaluation of SOVA algorithm in turbo code

On frequency offset estimation in the presence of narrowband interference

Identifiability of nonlinear channels

Bit error probability of narrow-band digital FM with limiter-discriminator detection in Nakagami-q mobile radio fading channels

A new method of source separation problems: turbo deflation

New combinatorial methods for the improvement of the convergence speed and the tracking ability of the fast stable RLS adaptive algorithm

A robustification method of the adaptive filtering algorithms in impulsive noise environments based on the likelihood ratio test

A simplified network of LMS filters for Bayesian equalization based on a state model

On impulse response symmetry of Farrow interpolators in rational sample rate conversion

2-D adaptive CPWQ fast filtering based on weighted least-squares errors

Improvement of the tracking ability of the Newton type adaptive filtering algorithm

A comparative study of some simplified RLS-type algorithms

Phase approximation in linear and logarithmic frequency domain

Design of DCT/spl I.bar/2D toward FPGA

A solution to reduce noise enhancement in pre-whitened LMS-type algorithms: the double direction adaptation

Recent advances in nonlinear control

An adaptive equalizer for frequency modulated signals

A fuzzy approach towards perceptual classification and segmentation of MP3/AAC audio

AMADEUS: a scalable HMM-based audio information retrieval system

Restoration of the voice timbre in telephone networks based on both voice and line properties

An error correction strategy for digital audio watermarking scheme

Multiresolution phase analysis of genomic signals

Studying DNA microarray data using independent component analysis

DNA microarray data preprocessing

Genetic networks inferred from time series of gene expression data

Inference of Boolean models of genetic networks using monotonic time transformations

PAPR reduction of coded OFDM signals based on iterative codeword construction

Achieving a high uplink capacity and coverage by using multicarriers in 3G-WCDMA systems

Iterative joint timing and carrier phase estimation using the SAGE algorithm for a coded DS-CDMA system

Blind source separation based successive interference cancellation in the DS-CDMA uplink

Chernoff bound coded DS-CDMA system using MMSE receiver in Rayleigh fading channel

A tapped delay line model of multipath channel for CDMA systems

Analog to digital converter resolution of multi-band OFDM and pulsed-OFDM ultra wideband systems

Estimation of closely-spaced paths via particle filters for WCDMA positioning

Modified PIC in MC-CDMA systems

Novel adaptive filter for fading channel estimation in coherent CDMA receivers

A blind synchronous multi-user DS-CDMA equaliser with partial loading

Finite dimensional feedback control of the 1-d Kuramoto-Sivashinsky equation

Modelling and analysis of an active suspension 1/4 of vehicle with bond graph

Modelling and identification of the asynchronous machine

Model-based fault diagnosis of two-time scales singularly perturbed systems

Dynamic modelling of a twin rotor system in hovering position

Model reduction for descriptor systems

Parametrization for control of linear PDE systems

Synthesis of fractional Kautz-like basis with two periodically repeating complex conjugate modes

Blackfin-FPGA multiprocessor system for ultrasonic-data reduction

Volterra kernels identification using higher order moments for different input signals

A modified version of a formal pruning algorithm based on local relative variance analysis

Weighted sampling and signal reconstruction in spline subspaces

Third-order Volterra kernels complexity reduction using PARAFAC

Fault diagnosis for a delta-sigma converter by a neural network

Reconstruction of signal on some non-band-limited spaces

Comparative analysis of the performance of the information theoretic criteria for model order estimation of InSAR signals corrupted by multiplicative noise

Model order estimation of InSAR signals corrupted by multiplicative noise using the Capon method

Photothermal signal profile distortion due to radiative effects beneath graphite-coated plate steel sample heated by Gaussian beam

Signal processing challenges for wireless communications

A system biology approach to robustness analysis of circadian rhythm

Content Provider	IEEE Xplore Digital Library
Author	Doyle III,F.J.
Copyright Year	2004
Description	Author affiliation: Dept. of Chem. Eng., California Univ., Santa Barbara, CA, USA (Doyle, F.J., III)
Abstract	Summary form only given. Understanding regulation is a critical hurdle in unraveling complex biological systems. As gene-level architectures become known, the open challenge is to assign predictable behavior to a known structure, the so-called "genotype-to-phenotype" problem. In response to this challenge, the discipline of systems biology has emerged with an integrative perspective towards determining complex systems behavior. A property of particular interest is the robustness of the biophysical network: the ability to maintain some target level of behavior or performance in the presence of uncertainty and/or perturbations. In biological systems, these disturbances can be environmental (heat, pH, etc.) or intrinsic to the organism (changes in kinetic parameters). While preliminary results are available for simple (low-dimensional, deterministic) biological systems, general tools for analyzing these tradeoffs are the subject of active research. The gene network which underlies circadian rhythms is an ideal system for robustness studies, owing to its remarkable performance in a highly uncertain environment. Of interest for control theoretic analyses, the dominant elements of the postulated architecture for Drosophila consist of nested negative autoregulatory feedback loops controlling the expression of timeless (tim) and period (per) interlocked with a positive feedback loop established via the dClock gene. Complex formation, regulated translocation and degradation of several of these gene products, which is additionally controlled (and delayed) by protein phosphorylation, add further levels of complexity to the system. In this talk, a number of quantitative tools from systems theory are presented as enabling methodologies for unraveling robust biological regulatory systems, with an emphasis on sensitivity analysis. Our work on modeling and analysis of the Drosophila circadian rhythm gene network are detailed, and generalizations are be drawn for the mammalian analog and for more general gene regulatory networks.
Sponsorship	IEEE IEEE Finland Section IEEE SP/CAS Chapter, Finland EURASIP UCSB Tampere Univ. of Technol. Ecole Superieure des Sciences et Techniques de Tunis, ESSTT, Univ. of Manouba
File Size	71335
File Format	PDF
ISBN	0780383796
DOI	10.1109/ISCCSP.2004.1296250
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2004-03-21
Publisher Place	Tunisia
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Degradation Feedback loop Uncertainty Systems biology Biological systems Control systems Robustness Organisms Circadian rhythm Kinetic theory
Content Type	Text
Resource Type	Article

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