NDLI: High-performance 3D deconvolution of fluorescence micrographs

Content Provider	IEEE Xplore Digital Library
Author	Kromwijk, Sander Lefkimmiatis, Stamatios Unser, Michael
Copyright Year	2014
Description	Author affiliation: Biomedical Imaging Group, EPFL, CH-1015 Lausanne, Switzerland (Kromwijk, Sander; Lefkimmiatis, Stamatios; Unser, Michael)
Abstract	In this work, we describe our approach of combining the most effective ideas and tools developed during the past years to build a variational 3D deconvolution system that can be successfully employed in fluorescence microscopy. In particular, the main components of our deconvolution system involve proper handling of image boundaries, choice of a regularizer that is best suited to biological images, and use of an optimization algorithm that can be efficiently implemented on graphics processing units (GPUs) and fully benefit from their massive parallel computational capabilities. We show that our system leads to very competitive results and reduces the computational time by at least one order of magnitude compared to a CPU implementation. This makes the use of advanced deconvolution techniques feasible in practice and attractive computationally.
Starting Page	1718
Ending Page	1722
File Size	300364
Page Count	5
File Format	PDF
ISBN	9781479957514
DOI	10.1109/ICIP.2014.7025344
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2014-10-27
Publisher Place	France
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Graphics processing units Deconvolution Three-dimensional displays Image reconstruction Microscopy Symmetric matrices Distortion measurement convex optimization Graphics Processing Unit image regularization variational reconstruction
Content Type	Text
Resource Type	Article

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Distortion Driven Variational Multi-view Reconstruction

Fast dense 3D reconstruction using an adaptive multiscale discrete-continuous variational method

Rate-Distortion Optimized Progressive 3D Reconstruction from Multi-view Images

Accelerating Laue Depth Reconstruction Algorithm with CUDA

Improving the speed of 3D information presentation in a microhabitat

Hybrid digital holographic microscope for simultaneous measurement of 3D phase and 3D fluorescence distributions and its signal processing

A 3D Shape Measurement System Based on Random Pattern Projection

Cluster-based 3D reconstruction of aerial video

GPU-SHOT: Parallel Optimization for Real-Time 3D Local Description

High-performance 3D deconvolution of fluorescence micrographs

Similar Documents

Distortion Driven Variational Multi-view Reconstruction

Fast dense 3D reconstruction using an adaptive multiscale discrete-continuous variational method

Rate-Distortion Optimized Progressive 3D Reconstruction from Multi-view Images

Accelerating Laue Depth Reconstruction Algorithm with CUDA

Improving the speed of 3D information presentation in a microhabitat

Hybrid digital holographic microscope for simultaneous measurement of 3D phase and 3D fluorescence distributions and its signal processing

A 3D Shape Measurement System Based on Random Pattern Projection

Cluster-based 3D reconstruction of aerial video

GPU-SHOT: Parallel Optimization for Real-Time 3D Local Description

High-performance 3D deconvolution of fluorescence micrographs