NDLI: jViz.Rna - An Interactive Graphical Tool for Visualizing RNA Secondary Structure Including Pseudoknots

Content Provider	IEEE Xplore Digital Library
Author	Wiese, K.C. Glen, E.
Copyright Year	2006
Description	Author affiliation: Sch. of Comput. Sci., Simon Fraser Univ., Surrey, BC (Wiese, K.C.; Glen, E.)
Abstract	In order for structure prediction researchers to better understand the results of their algorithms and to enable life science researchers to interpret RNA structure easily, it is helpful to provide them with a flexible and powerful tool for RNA secondary structure visualization. jViz.Rna is a multi-platform visualization tool capable of displaying RNA secondary structures encoded in a variety of file formats. A single structure can be shown using the linear Feynman, circular Feynman, dot plot, and classical structure visualization models. The resulting drawings are dynamic and can easily be further modified by the user. Any of the drawings produced can be saved to disk enabling easy dissemination. The unique usage of a spring model for classical structure drawing allows for clear visualization of pseudoknots with minimal overlaps. The addition of a locality tool allows for the isolation of pseudoknotted regions or other regions of interest
Starting Page	659
Ending Page	664
File Size	598643
Page Count	6
File Format	PDF
ISBN	0769525171
ISSN	10637125
DOI	10.1109/CBMS.2006.104
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2006-06-22
Publisher Place	USA
Access Restriction	Subscribed
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Visualization RNA Computer displays Molecular biophysics Java Springs Proteins Shape Dynamic programming Genetic algorithms
Content Type	Text
Resource Type	Article
Subject	Radiology, Nuclear Medicine and Imaging Computer Science Applications

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1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
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9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

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