NDLI: Characterizing the Effect of Coarse-Scale PBN Modeling on Dynamics and Intervention Performance of Genetic Regulatory Networks Represented by Stochastic Master Equation Models

Content Provider	IEEE Xplore Digital Library
Author	Pal, R. Bhattacharya, S.
Copyright Year	1991
Abstract	Fine-scale models based on stochastic master equations can provide the most detailed description of the dynamics of gene expression and imbed, in principle, all the information about the biochemical reactions involved in gene interactions. However, there is limited time-series experimental data available for inference of such fine-scale models. Furthermore, the computational complexity involved in the design of optimal intervention strategies to favorably effect system dynamics for such detailed models is enormous. Thus, there is a need to design mappings from fine-scale models to coarse-scale models while maintaining sufficient structure for the problem at hand and to study the effect of intervention policies designed using coarse-scale models when applied to fine-scale models. In this paper, we propose a mapping from a fine-scale model represented by a stochastic master equation to a coarse-scale model represented by a probabilistic Boolean network that maintains the collapsed steady state probability distribution of the detailed model. We also derive bounds on the performance of the intervention strategy designed using the coarse-scale model when applied to the fine-scale model.
Sponsorship	IEEE Signal Processing Society
Starting Page	3341
Ending Page	3351
Page Count	11
File Size	566426
File Format	PDF
ISSN	1053587X
Volume Number	58
Issue Number	6
Language	English
Publisher	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Publisher Date	2010-06-01
Publisher Place	U.S.A.
Access Restriction	One Nation One Subscription (ONOS)
Rights Holder	Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subject Keyword	Genetics Stochastic processes Equations Biological system modeling Mathematical model Gene expression Neoplasms Systems biology Medical diagnostic imaging Computational complexity stochastic master equations Markov chain models probabilistic Boolean networks relationships between genetic regulatory network models
Content Type	Text
Resource Type	Article
Subject	Signal Processing Electrical and Electronic Engineering

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