NDLI: Insights into the global freshwater virome

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Year: 2023 Month: August Volume: 14

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Editorial: Digitizing frozen earth—revealing microbial diversity and physiology in the cryobiosphere through “omics” tools, volume II

Soil moisture and pH differentially drive arbuscular mycorrhizal fungal composition in the riparian zone along an alpine river of Nam Co watershed

Dietary supplementation with fermented plant product modulates production performance, egg quality, intestinal mucosal barrier, and cecal microbiota in laying hens

Control of Listeria monocytogenes in chicken dry-fermented sausages with bioprotective starter culture and high-pressure processing

Impact of key parameters involved with plant-microbe interaction in context to global climate change

Prospects for the application of infectious virus detection technology based on propidium monoazide in African swine fever management

Response of bacterial community composition and co-occurrence network to straw and straw biochar incorporation

Giant pandas’ staple food bamboo phyllosphere fungal community and its influencing factors

Severe skin and subcutaneous pythiosis in China: Metagenomic identification and characterization of Pythium insidiosum

RNase III coding genes modulate the cross-kingdom biofilm of Streptococcus mutans and Candida albicans

Integrated metagenomics and targeted-metabolomics analysis of the effects of phenylalanine on loperamide-induced constipation in rats

The virulence factor regulator and quorum sensing regulate the type I-F CRISPR-Cas mediated horizontal gene transfer in Pseudomonas aeruginosa

The impact of single-cell genomics on the field of mycobacterial infection

Characterization of the “gut microbiota-immunity axis” and microbial lipid metabolites in atrophic and potential celiac disease

Bacterial community of sediments under the Eastern Boundary Current System shows high microdiversity and a latitudinal spatial pattern

Semi-rational engineering membrane binding domain of L-amino acid deaminase from Proteus vulgaris for enhanced α-ketoisocaproate

Network analysis reveals microbe-mediated impacts of aeration on deep sediment layer microbial communities

Oropharyngeal microbiome profiled at admission is predictive of the need for respiratory support among COVID-19 patients

Comparative genomics of Staphylococcus capitis reveals species determinants

The two-component regulatory system CenK–CenR regulates expression of a previously uncharacterized protein required for salinity and oxidative stress tolerance in Sinorhizobium meliloti

Microorganisms associated with Sporobolus anglicus, an invasive dimethylsulfoniopropionate producing salt marsh plant, are an unrecognized sink for dimethylsulfide

Taxonomy and control of Trichoderma hymenopellicola sp. nov. responsible for the first green mold disease on Hymenopellis raphanipes

Strategies targeting hemagglutinin cocktail as a potential universal influenza vaccine

Chitosan-based delivery system enhances antimicrobial activity of chlorhexidine

Characterization of cervical canal and vaginal bacteria in pregnant women with cervical incompetence

Taxol and β-tubulins from endophytic fungi isolated from the Himalayan Yew, Taxus wallichiana Zucc.

Potential of plant growth promoting bacterial consortium for improving the growth and yield of wheat under saline conditions

Hydrophobic cell surface display system of PETase as a sustainable biocatalyst for PET degradation

Contrasting effects of maize litter and litter-derived biochar on the temperature sensitivity of paddy soil organic matter decomposition

Rhodococcus strains as a good biotool for neutralizing pharmaceutical pollutants and obtaining therapeutically valuable products: Through the past into the future

Potential roles of gut microbes in biotransformation of natural products: An overview

An improved luciferase immunosorbent assay for ultrasensitive detection of antibodies against African swine fever virus

CRISPR/Cas9 RNP-assisted validation of palmarumycin biosynthetic gene cluster in Lophiotrema sp. F6932

Comparison of assembly process and co-occurrence pattern between planktonic and benthic microbial communities in the Bohai Sea

Synthesis of the cyanobacterial halometabolite Chlorosphaerolactylate B and demonstration of its antimicrobial effect in vitro and in vivo

A new rapid and sensitive method for detecting chicken infectious anemia virus

A reporter cell line for the automated quantification of SARS-CoV-2 infection in living cells

Rhamnolipids and fengycins, very promising amphiphilic antifungal compounds from bacteria secretomes, act on Sclerotiniaceae fungi through different mechanisms

Mixed infection of an emaravirus, a crinivirus, and a begomovirus in Pueraria lobata (Willd) Ohwi

The effects of Clostridium butyricum on Ira rabbit growth performance, cecal microbiota and plasma metabolome

Biosynthesis of silver nanoparticles from Syzygium cumini leaves and their potential effects on odontogenic pathogens and biofilms

Concepts and conjectures concerning predatory performance of myxobacteria

Evaluation of the oxidative stress alleviation in Lupinus albus var. orden Dorado by the inoculation of four plant growth-promoting bacteria and their mixtures in mercury-polluted soils

Plumbagin resurrect colistin susceptible against colistin-resistant Pseudomonas aeruginosa in vitro and in vivo

Effects of dazomet combined with Rhodopsesudomonas palustris PSB-06 on root-knot nematode, Meloidogyne incognita infecting ginger and soil microorganisms diversity

Staphylococcus aureus is able to generate resistance to novel lipoglycopeptide antibiotic gausemycin A

Long-term cultivation alter soil bacterial community in a forest-grassland transition zone

Evaluation of the kitchen microbiome and food safety behaviors of predominantly low-income families

In-depth investigation of microRNA-mediated cross-kingdom regulation between Asian honey bee and microsporidian

Silicon fertilizer mediated structural variation and niche differentiation in the rhizosphere and endosphere bacterial microbiome and metabolites of sugarcane

Streptomyces: The biofactory of secondary metabolites

Molecular docking study of various Enterovirus—A71 3C protease proteins and their potential inhibitors

Comprehensive phylogeographic and phylodynamic analyses of global Senecavirus A

Virome of Pseudostellaria heterophylla: Identification and characterization of three novel carlaviruses and one novel amalgavirus associated with viral diseases of Pseudostellaria heterophylla

Spectral imaging and nucleic acid mimics fluorescence in situ hybridization (SI-NAM-FISH) for multiplex detection of clinical pathogens

RNA-Seq transcriptomic analysis reveals gene expression profiles of acetic acid bacteria under high-acidity submerged industrial fermentation process

Polyketides with IDH1 R132h and PTP1B inhibitory activities from the desert-plant-derived fungus Alternaria sp. HM 134

Activation of TLR4 by viral glycoproteins: A double-edged sword?

Effects of high concentrate rations on ruminal fermentation and microbiota of yaks

Multilocus sequence typing of diverse phytoplasmas using hybridization probe-based sequence capture provides high resolution strain differentiation

Global research trends on the links between the gut microbiota and diabetes between 2001 and 2021: A bibliometrics and visualized study

A rapid colorimetric lateral flow test strip for detection of live Salmonella Enteritidis using whole phage as a specific binder

Fish gut-associated bacterial communities in a tropical lagoon (Aghien lagoon, Ivory Coast)

Differential assembly of root-associated bacterial and fungal communities of a dual transgenic insect-resistant maize line at different host niches and different growth stages

Dissemination and prevalence of plasmid-mediated high-level tigecycline resistance gene tet (X4)

FTX271: A potential gene resource for plant antiviral transgenic breeding

Advance in remediated of heavy metals by soil microbial fuel cells: Mechanism and application

Interaction of acetic acid bacteria and lactic acid bacteria in multispecies solid-state fermentation of traditional Chinese cereal vinegar

Plant traits and community composition drive the assembly processes of abundant and rare fungi across deserts

Lacticaseibacillus rhamnosus R0011 secretome attenuates Salmonella enterica serovar Typhimurium secretome-induced intestinal epithelial cell monolayer damage and pro-inflammatory mediator production in intestinal epithelial cell and antigen-presenting cell co-cultures

The Contribution of Proton-Donor pKa on Reactivity Profiles of [FeFe]-hydrogenases

Phenotypic and molecular characterization of IMP-producing Enterobacterales in Spain: Predominance of IMP-8 in Klebsiella pneumoniae and IMP-22 in Enterobacter roggenkampii

Microbial roles in cave biogeochemical cycling

Physiologically relevant microsystems to study viral infection in the human liver

Integrative analysis of the mouse fecal microbiome and metabolome reveal dynamic phenotypes in the development of colorectal cancer

The research progress in the interaction between Candida albicans and cancers

Editorial: Insights in microbial symbioses: 2021

Skin-to-blood pH shift triggers metabolome and proteome global remodelling in Staphylococcus epidermidis

Invasive group B Streptococcus strains and clinical characteristics in Danish infants from 1999 to 2009

Characterization of a Bacillus velezensis strain isolated from Bolbostemmatis Rhizoma displaying strong antagonistic activities against a variety of rice pathogens

Metagenomic insights into the antibiotic resistomes of typical Chinese dairy farm environments

The microbiome of the dinoflagellate Prorocentrum cordatum in laboratory culture and its changes at higher temperatures

Bitter friends are not always toxic: The loss of acetic acid bacteria and the absence of Komagataeibacter in the gut microbiota of the polyphagous fly Anastrepha ludens could inhibit its development in Psidium guajava in contrast to A. striata and A. fraterculus that flourish in this host

Complete genome sequence, metabolic model construction, and huangjiu application of Saccharopolyspora rosea A22, a thermophilic, high amylase and glucoamylase actinomycetes

Enterovirus A71 utilizes host cell lipid β-oxidation to promote its replication

Elucidating the microbiome of the sustainable peat replacers composts and nature management residues

Culture dependent and independent characterization of endophytic bacteria in the seeds of highland barley

Insights into the global freshwater virome

Plant NLRs: Evolving with pathogen effectors and engineerable to improve resistance

Particles act as ‘specialty centers’ with expanded enzymatic function throughout the water column in the western North Atlantic

Cryoelectron microscopy structures of a human neutralizing antibody bound to MERS-CoV spike glycoprotein

Characterization and subcellular localization of Alongshan virus proteins

Multi-omics analysis reveals the host–microbe interactions in aged rhesus macaques

Pre-exposure to Candida albicans induce trans-generational immune priming and gene expression of Musca domestica

A computational model for microbial colonization of an antifouling surface

Approaches for the establishment of optimized co-culture system of multiple Trichoderma strains for culture metabolites highly effective in cucumber growth promotion

Dispersal limitation dominates the community assembly of abundant and rare fungi in dryland montane forests

Corrigendum: Pandemics throughout history

Multi-dimensional investigation and distribution characteristics analysis of gut microbiota of different marine fish in Fujian Province of China

Mixed conifer-broadleaf trees on arbuscular mycorrhizal and ectomycorrhizal communities in rhizosphere soil of different plantation stands in the temperate zone, Northeast China

Genome collection of Shewanella spp. isolated from spoiled lamb

rAAV expressing recombinant neutralizing antibody for the botulinum neurotoxin type A prophylaxis

Oral and fecal microbiome of confiscated Bengal slow lorises in response to confinement duration

Comparison of inhibitory effects and mechanisms of lactonic sophorolipid on different pathogenic bacteria

The complete mitochondrial genome of Isochrysis galbana harbors a unique repeat structure and a specific trans-spliced cox1 gene

Characterization and fungicide sensitivity of Colletotrichum godetiae causing sweet cherry fruit anthracnose in Guizhou, China

In vivo Phage Display: A promising selection strategy for the improvement of antibody targeting and drug delivery properties

Effects of capsicum oleoresin supplementation on rumen fermentation and microbial abundance under different temperature and dietary conditions in vitro

Positive feedback between peanut and arbuscular mycorrhizal fungi with the application of hairy vetch in Ultisol

Metagenomic analysis of the soil microbial composition and salt tolerance mechanism in Yuncheng Salt Lake, Shanxi Province

An indigenous inland genotype of the black yeast Hortaea werneckii inhabiting the great pyramid of Giza, Egypt

Residues from black soldier fly (Hermetia illucens) larvae rearing influence the plant-associated soil microbiome in the short term

Phylogenetic survey of the subtilase family and a data-mining-based search for new subtilisins from Bacillaceae

Development versus predation: Transcriptomic changes during the lifecycle of Myxococcus xanthus

Proteomic and bioinformatic analyses of proteins in the outer membrane and extracellular compartments and outer membrane vesicles of Candidatus Liberibacter species

Comparative profiling of canonical and non-canonical small RNAs in the rice blast fungus, Magnaporthe oryzae

Effect of Lactobacillus fermentum ZS40 on the NF-κB signaling pathway in an azomethane-dextran sulfate sodium-induced colon cancer mouse model

No time to die: Comparative study on preservation protocols for anaerobic fungi

Conquering the host: Bordetella spp. and Pseudomonas aeruginosa molecular regulators in lung infection

Potential application of the probiotic Bacillus licheniformis as an adjuvant in the treatment of diseases in humans and animals: A systematic review

Comparison of gut microflora of donkeys in high and low altitude areas

Dynamic changes in the endophytic bacterial community during maturation of Amorphophallus muelleri seeds

Antibiotic resistance and pathogenicity assessment of various Gardnerella sp. strains in local China

Characterization of rumen, fecal, and milk microbiota in lactating dairy cows

Identification and characterization of a novel metallo β-lactamase, SZM-1, in Shenzhen Bay, South China

Isolation and characterization of phosphate solubilizing bacteria naturally colonizing legumes rhizosphere in Morocco

Reducing culture medium nitrogen supply coupled with replenishing carbon nutrient simultaneously enhances the biomass and lipid production of Chlamydomonas reinhardtii

Engineering of lysin by fusion of antimicrobial peptide (cecropin A) enhances its antibacterial properties against multidrug-resistant Acinetobacter baumannii

Exopolysaccharide composition and size in Sulfolobus acidocaldarius biofilms

Diversity-scaling analysis of human breast milk microbiomes from population perspective

Integrated analysis of the salivary microbiome and metabolome in chronic and aggressive periodontitis: A pilot study

Corrigendum: Separation of Mycobacterium smegmatis from a mixed culture using the cell wall binding domain of D29 mycobacteriophage endolysin

Functional interplay between antagonistic bacteria and Rhizoctonia solani in the tomato plant rhizosphere

Corrigendum: Emerging microfluidic technologies for microbiome research

Editorial: Plant microbiome: Diversity, functions, and applications

The right microbe-associated molecular patterns for effective recognition by plants

Relationship between gut microbiota and lymphocyte subsets in Chinese Han patients with spinal cord injury

Soil-atmosphere fluxes of CO2, CH4, and N2O across an experimentally-grown, successional gradient of biocrust community types

Intestinal microbial diversity in female rhesus (Macaca mulatta) at different physiological periods

Polyketides isolated from an endophyte Penicillium oxalicum 2021CDF-3 inhibit pancreatic tumor growth

PCB-77 biodegradation potential of biosurfactant producing bacterial isolates recovered from contaminated soil

Novel exopolysaccharide derived from probiotic Lactobacillus pantheris TCP102 strain with immune-enhancing and anticancer activities

Does filter pore size introduce bias in DNA sequence-based plankton community studies?

Controllable preparation of chitosan oligosaccharides via a recombinant chitosanase from marine Streptomyces lydicus S1 and its potential application on preservation of pre-packaged tofu

Global genetic diversity and evolutionary patterns among Potato leafroll virus populations

Complete genome sequences of classical swine fever virus: Phylogenetic and evolutionary analyses

Human gut microbiota in health and disease: Unveiling the relationship

Proper irrigation amount for eggplant cultivation in a solar greenhouse improved plant growth, fruit quality and yield by influencing the soil microbial community and rhizosphere environment

A review on disinfection methods for inactivation of waterborne viruses

Whole-genome sequence analysis for evaluating the safety and probiotic potential of Lactiplantibacillus pentosus 9D3, a gamma-aminobutyric acid (GABA)-producing strain isolated from Thai pickled weed

Phage-prokaryote coexistence strategy mediates microbial community diversity in the intestine and sediment microhabitats of shrimp culture pond ecosystem

Distribution pattern of endophytic bacteria and fungi in tea plants

Heterologous vaccine immunogenicity, efficacy, and immune correlates of protection of a modified-live virus porcine reproductive and respiratory syndrome virus vaccine

Phenotype testing, genome analysis, and metabolic interactions of three lactic acid bacteria strains existing as a consortium in a naturally fermented milk

Colony growth and biofilm formation of Aspergillus niger under simulated microgravity

Metabolomic and metagenomic analyses of the Chinese mitten crab Eriocheir sinensis after challenge with Metschnikowia bicuspidata

Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate

Metabolomic profiling of polymyxin-B in combination with meropenem and sulbactam against multi-drug resistant Acinetobacter baumannii

Transcriptome analysis of the response of Hypomyces chrysospermus to cadmium stress

Salicylic acid remodeling of the rhizosphere microbiome induces watermelon root resistance against Fusarium oxysporum f. sp. niveum infection

Identification of methylation signatures and rules for predicting the severity of SARS-CoV-2 infection with machine learning methods

Deep-branching ANME-1c archaea grow at the upper temperature limit of anaerobic oxidation of methane

Effect of experimentally increased nutrient availability on the structure, metabolic activities, and potential microbial functions of a maritime Antarctic microbial mat

Effects of different cutting methods and additives on the fermentation quality and microbial community of Saccharum arundinaceum silage

Development of a rapid neutralization testing system for Rhinovirus C15 based on the enzyme-linked immunospot assay

Integration of metagenomic and metabolomic insights into the effects of microcystin-LR on intestinal microbiota of Litopenaeus vannamei

Of its five acyl carrier proteins, only AcpP1 functions in Ralstonia solanacearum fatty acid synthesis

Breaking down the cell wall: Still an attractive antibacterial strategy

Inhibitory effect and mechanism of action of juniper essential oil on gray mold in cherry tomatoes

Delayed application of N fertilizer mitigates the carbon emissions of pea/maize intercropping via altering soil microbial diversity

Control efficiency of hexaconazole-lentinan against wheat sharp eyespot and wheat crown rot and the associated effects on rhizosphere soil fungal community

Simulated seasonal diets alter yak rumen microbiota structure and metabolic function

Insights into the microbial life in silica-rich subterranean environments: microbial communities and ecological interactions in an orthoquartzite cave (Imawarì Yeuta, Auyan Tepui, Venezuela)

High replacement of fishmeal by Chlorella meal affects intestinal microbiota and the potential metabolic function in largemouth bass (Micropterus salmoides)

Isolation, identification, and biochemical characterization of a novel bifunctional phosphomannomutase/phosphoglucomutase from the metagenome of the brown alga Laminaria digitata

Liver-stage fate determination in Plasmodium vivax parasites: Characterization of schizont growth and hypnozoite fating from patient isolates

The influence of gastric atrophy on Helicobacter pylori antibiotics resistance in therapy-naïve patients

Characteristics of denitrification and microbial community in respect to various H2 pressures and distances to the gas supply end in H2-based MBfR

Genome-guided prediction of acid resistance mechanisms in acidophilic methanotrophs of phylogenetically deep-rooted Verrucomicrobia isolated from geothermal environments

Effects of fecal microbiota transplantation from yaks on weaning diarrhea, fecal microbiota composition, microbial network structure and functional pathways in Chinese Holstein calves

The source, fate and prospect of antibiotic resistance genes in soil: A review

Diet drives the gut microbiome composition and assembly processes in winter migratory birds in the Poyang Lake wetland, China

Detection of Alternaria solani with high accuracy and sensitivity during the latent period of potato early blight

Analysis of CT scan images for COVID-19 pneumonia based on a deep ensemble framework with DenseNet, Swin transformer, and RegNet

The detection of urinary viruses is associated with aggravated symptoms and altered bacteriome in female with overactive bladder

Characteristics of NtCCD1-3 from tobacco, and protein engineering of the CCD1 to enhance β-ionone production in yeast

Investigating genetic diversity within the most abundant and prevalent non-pathogenic leaf-associated bacteria interacting with Arabidopsis thaliana in natural habitats

Epidemiological characteristics an outbreak of ST11 multidrug-resistant and hypervirulent Klebsiella pneumoniae in Anhui, China

Cocktail of isobavachalcone and curcumin enhance eradication of Staphylococcus aureus biofilm from orthopedic implants by gentamicin and alleviate inflammatory osteolysis

3-Phenyllactic acid generated in medicinal plant extracts fermented with plant-derived lactic acid bacteria inhibits the biofilm synthesis of Aggregatibacter actinomycetemcomitans

Responses of microbial necromass carbon and microbial community structure to straw- and straw-derived biochar in brown earth soil of Northeast China

Knowing the unknown: The underestimation of monkeypox cases. Insights and implications from an integrative review of the literature

Research progress on the effect of gut and tumor microbiota on antitumor efficacy and adverse effects of chemotherapy drugs

Comparative analysis reveals the modular functional structure of conjugative megaplasmid pTTS12 of Pseudomonas putida S12: A paradigm for transferable traits, plasmid stability, and inheritance?

Amphiphilic aminoglycosides: Modifications that revive old natural product antibiotics

Editorial: Human coronavirus research: 20 years since the SARS-CoV outbreak

Candida guilliermondii as an agent of postpartum subacute mastitis in Rio de Janeiro, Brazil: Case report

Dormancy and germination of microsclerotia of Verticillium longisporum are regulated by soil bacteria and soil moisture levels but not by nutrients

Soil bacteria are more sensitive than fungi in response to nitrogen and phosphorus enrichment

Prolactin regulates H3K9ac and H3K9me2 epigenetic marks and miRNAs expression in bovine mammary epithelial cells challenged with Staphylococcus aureus

Identification of Leuconostoc species based on novel marker genes identified using real-time PCR via computational pangenome analysis

Minimal impacts on the wheat microbiome when Trichoderma gamsii T6085 is applied as a biocontrol agent to manage fusarium head blight disease

Impact of SARS-CoV-2-specific memory B cells on the immune response after mRNA-based Comirnaty vaccine in seronegative health care workers

Genome-wide analysis reveals the emergence of multidrug resistant Stenotrophomonas acidaminiphila strain SINDOREI isolated from a patient with sepsis

Recent Update on Applications of Quaternary Ammonium Silane as an Antibacterial Biomaterial: A Novel Drug Delivery Approach in Dentistry

Establishment of a reverse transcription real-time quantitative PCR method for Getah virus detection and its application for epidemiological investigation in Shandong, China

Construction of chicken infectious anemia virus infectious clone and study on its pathogenicity

Corrigendum: Wildlife is a potential source of human infections of Enterocytozoon bieneusi and Giardia duodenalis in southeastern China

Longitudinal analysis of exposure to a low concentration of oxytetracycline on the zebrafish gut microbiome

Genomic footprints related with adaptation and fumonisins production in Fusarium proliferatum

Tianhuang formula reduces the oxidative stress response of NAFLD by regulating the gut microbiome in mice

Comparison and interpretation of freshwater bacterial structure and interactions with organic to nutrient imbalances in restored wetlands

Antifungal effects of volatile organic compounds produced by Trichoderma koningiopsis T2 against Verticillium dahliae

Concerns on cross-species transmission of SARS-CoV-2 between pets and humans

Extracellular enzyme stoichiometry reveals carbon and nitrogen limitations closely linked to bacterial communities in China’s largest saline lake

Discerning the role of polymyxin B nonapeptide in restoring the antibacterial activity of azithromycin against antibiotic-resistant Escherichia coli

Exploitation of wasted bread as substrate for polyhydroxyalkanoates production through the use of Haloferax mediterranei and seawater

Species classification and novel plasmid identifications in Arcobacter cryaerophilus and Arcobacter cryaerophilus-like organisms

Effects of fungal seed endophyte FXZ2 on Dysphania ambrosioides Zn/Cd tolerance and accumulation

First generation of multifunctional peptides derived from latarcin-3a from Lachesana tarabaevi spider toxin

Efficient production of the β-ionone aroma compound from organic waste hydrolysates using an engineered Yarrowia lipolytica strain

Mouse feeding study and microbiome analysis of sourdough bread for evaluation of its health effects

Association between rumen microbiota and marbling grade in Hu sheep

Dietary supplementation with Cyberlindnera jadinii improved growth performance, serum biochemical Indices, antioxidant status, and intestinal health in growing raccoon dogs (Nyctereutes procyonoides)

Hydrological connectivity promotes coalescence of bacterial communities in a floodplain

Biotreatment of oily sludge by a bacterial consortium: Effect of bioprocess conditions on biodegradation efficiency and bacterial community structure

Viral metatranscriptomic approach to study the diversity of virus(es) associated with Common Bean (Phaseolus vulgaris L.) in the North-Western Himalayan region of India

Editorial: Biological rotary nanomotors

Two new forest pathogens in Phaeolus (Polyporales, Basidiomycota) on Chinese coniferous trees were confirmed by molecular phylogeny

The gas production, ruminal fermentation parameters, and microbiota in response to Clostridium butyricum supplementation on in vitro varying with media pH levels

Characteristics of soil microbiota and organic carbon distribution in jackfruit plantation under different fertilization regimes

Intramammary infusion of matrine-chitosan hydrogels for treating subclinical bovine mastitis —effects on milk microbiome and metabolites

Effects of tillage and biochar on soil physiochemical and microbial properties and its linkage with crop yield

Global coordination of the mutation and growth rates across the genetic and nutritional variety in Escherichia coli

Metagenomic evidence of suppressed methanogenic pathways along soil profile after wetland conversion to cropland

Seasonal variations in gut microbiota of semiprovisioned rhesus macaques (Macaca mulatta) living in a limestone forest of Guangxi, China

Factors promoting and limiting antimicrobial resistance in the environment – Existing knowledge gaps

Effect of host genetics and gut microbiome on fat deposition traits in pigs

High-throughput nanopore sequencing of Treponema pallidum tandem repeat genes arp and tp0470 reveals clade-specific patterns and recapitulates global whole genome phylogeny

A light-guiding urinary catheter for the inhibition of Proteus mirabilis biofilm formation

Antibiotic resistance in plant growth promoting bacteria: A comprehensive review and future perspectives to mitigate potential gene invasion risks

Epinephrine extensively changes the biofilm matrix composition in Micrococcus luteus C01 isolated from human skin

Supplementation with paraformic acid in the diet improved intestinal development through modulating intestinal inflammation and microbiota in broiler chickens

Functional analysis of the bZIP-type transcription factors AtfA and AtfB in Aspergillus nidulans

Arbuscular mycorrhizal fungi contribute to reactive oxygen species homeostasis of Bombax ceiba L. under drought stress

Molecular characterization of a novel partitivirus isolated from Rhizoctonia solani

Isolation of Pseudomonas aromaticivorans sp. nov from a hydrocarbon-contaminated groundwater capable of degrading benzene-, toluene-, m- and p-xylene under microaerobic conditions

Interactions between Candida albicans and the resident microbiota

Componential usage patterns in dengue 4 viruses reveal their better evolutionary adaptation to humans

Controlled human infectious models, a path forward in uncovering immunological correlates of protection: Lessons from enteric fevers studies

SsUbc2, a determinant of pathogenicity, functions as a key coordinator controlling global transcriptomic reprogramming during mating in sugarcane smut fungus

Regulation of the cecal microbiota community and the fatty liver deposition by the addition of brewers’ spent grain to feed of Landes geese

Meat and bone meal stimulates microbial diversity and suppresses plant pathogens in asparagus straw composting

Comparison of molecular and MALDI-TOF MS identification and antifungal susceptibility of clinical Fusarium isolates in Southern China

Clostridium butyricum improves the intestinal health of goats by regulating the intestinal microbial community

OxyR contributes to virulence of Acidovorax citrulli by regulating anti-oxidative stress and expression of flagellin FliC and type IV pili PilA

Gut microbiome and microbial metabolites in NAFLD and after bariatric surgery: Correlation and causality

Potential of gut-derived short-chain fatty acids to control enteric pathogens

Ophiostomatoid fungi synergize attraction of the Eurasian spruce bark beetle, Ips typographus to its aggregation pheromone in field traps

Exploring bacterioplankton communities and their temporal dynamics in the rearing water of a biofloc-based shrimp (Litopenaeus vannamei) aquaculture system

Molecular epidemiology and antimicrobial susceptibility of Pseudomonas spp. and Acinetobacter spp. from clinical samples at Jimma medical center, Ethiopia

Influence of plant genotype and soil on the cotton rhizosphere microbiome

Comparative transcriptomic and lipidomic analyses indicate that cold stress enhanced the production of the long C18–C22 polyunsaturated fatty acids in Aurantiochytrium sp.

Medical cannabis dimethyl ether, ethanol and butane extracts inhibit the in vitro growth of bacteria and dermatophytes causing common skin diseases

Recent advances in inhibition of porcine reproductive and respiratory syndrome virus through targeting CD163

Effects of g-C3N4 on bacterial community and tetracycline resistance genes in two typical sediments in tetracycline pollution remediation

More than you can see: Unraveling the ecology and biodiversity of lichenized fungi associated with leaves and needles of 12 temperate tree species using high-throughput sequencing

Editorial: Antimicrobial peptides and mRNA therapy: Clinical, Veterinary, and plant pathology perspectives with special attention to combatting MDR pathogens

Genomic characterization of a new phage BUCT541 against Klebsiella pneumoniae K1-ST23 and efficacy assessment in mouse and Galleria mellonella larvae

Highly efficient degradation of cypermethrin by a co-culture of Rhodococcus sp. JQ-L and Comamonas sp. A-3

Genomic and evolutionary characteristics of G9P[8], the dominant group a rotavirus in China (2016–2018)

Enhanced mass transfer of pulsed vacuum pressure pickling and changes in quality of sour bamboo shoots

Insights into the impact of manure on the environmental antibiotic residues and resistance pool

Bacterial biomarkers capable of identifying recurrence or metastasis carry disease severity information for lung cancer

Convergence of biofilm successional trajectories initiated during contrasting seasons

Transmission of anelloviruses to HIV-1 infected children

Synthetic biology in marine cyanobacteria: Advances and challenges

Metabarcoding of mycetangia from the Dendroctonus frontalis species complex (Curculionidae: Scolytinae) reveals diverse and functionally redundant fungal assemblages

Catalyzing urea hydrolysis using two-step microbial-induced carbonate precipitation for copper immobilization: Perspective of pH regulation

Association between body weight and distal gut microbes in Hainan black goats at weaning age

Diversity, antibacterial activity and chemical analyses of gut-associated fungi isolated from the Crocothemis servilia

Identifying shared genetic loci between coronavirus disease 2019 and cardiovascular diseases based on cross-trait meta-analysis

Spatio-temporal spread and evolution of influenza A (H7N9) viruses

Effects of Allium mongolicum Regel ethanol extract on three flavor-related rumen branched-chain fatty acids, rumen fermentation and rumen bacteria in lambs

Microbial interactions play an important role in regulating the effects of plant species on soil bacterial diversity

Novel CRISPR-based detection of Leishmania species

Nematophilic bacteria associated with entomopathogenic nematodes and drug development of their biomolecules

Prevalence and antibiotics resistance of Ureaplasma species and Mycoplasma hominis in Hangzhou, China, from 2013 to 2019

Effect of NZ2114 against Streptococcus dysgalactiae biofilms and its application in murine mastitis model

Diversity of bacterial community in Jerusalem artichoke (Helianthus tuberosus L.) during storage is associated with the genotype and carbohydrates

Abundant antibiotic resistance genes in rhizobiome of the human edible Moringa oleifera medicinal plant

Innovative gamification and outreach tools to raise awareness about antimicrobial resistance

Evaluation of phages and liposomes as combination therapy to counteract Pseudomonas aeruginosa infection in wild-type and CFTR-null models

Repulsive response of Meloidogyne incognita induced by biocontrol bacteria and its effect on interspecific interactions

Successive mycelial subculturing decreased lignocellulase activity and increased ROS accumulation in Volvariella volvacea

Identification, characterization, and expression profiling of the putative U-box E3 ubiquitin ligase gene family in Sorghum bicolor

Biochemical characterization of a novel acidophilic β-xylanase from Trichoderma asperellum ND-1 and its synergistic hydrolysis of beechwood xylan

Characterization of extended-spectrum cephalosporins and fluoroquinolone resistance of a Salmonella enterica serovar Thompson isolate from ready-to-eat pork product in China

Status and epidemiological characteristics of high-risk human papillomavirus infection in multiple centers in Shenyang

Drug development concerning metallo-β-lactamases in gram-negative bacteria

Performance evaluation of the FAST™ System and the FAST-PBC Prep™ cartridges for speeded-up positive blood culture testing

Microbes-mediated integrated nutrient management for improved rhizo-modulation, pigeonpea productivity, and soil bio-fertility in a semi-arid agro-ecology

Corrigendum: Freeze–thaw condition limits the fermentation process and accelerates the aerobic deterioration of oat (Avena sativa) silage in the Qinghai-Tibet Plateau

Tannin tolerance lactic acid bacteria screening and their effects on fermentation quality of stylo and soybean silages

The red thread between methylation and mutation in bacterial antibiotic resistance: How third-generation sequencing can help to unravel this relationship

TMT-based quantitative proteomics analysis reveals the role of Notch signaling in FAdV-4-infected LMH cell

Using deep learning for gene detection and classification in raw nanopore signals

Reconciling concepts of black queen and tragedy of the commons in simulated bulk soil and rhizosphere prokaryote communities

Screening of interferon-stimulated genes against avian reovirus infection and mechanistic exploration of the antiviral activity of IFIT5

Myricetin inhibits pseudorabies virus infection through direct inactivation and activating host antiviral defense

Protective efficacy of intranasal inactivated pseudorabies vaccine is improved by combination adjuvant in mice

Unexpected diversity found within benthic microbial mats at hydrothermal springs in Crater Lake, Oregon

Corynebacterium accolens inhibits Staphylococcus aureus induced mucosal barrier disruption

pH mediated assemblage of carbon, nitrogen, and sulfur related microbial communities in petroleum reservoirs

Expression profiling of mRNA and functional network analyses of genes regulated by human papilloma virus E6 and E7 proteins in HaCaT cells

Novel species identification and deep functional annotation of electrogenic biofilms, selectively enriched in a microbial fuel cell array

Characterization of a Trametes versicolor aflatoxin B1-degrading enzyme (TV-AFB1D) and its application in the AFB1 degradation of contaminated rice in situ

The AhR ligand phthiocol and vitamin K analogs as Pseudomonas aeruginosa quorum sensing inhibitors

Contribution of insect gut microbiota and their associated enzymes in insect physiology and biodegradation of pesticides

Metabolome, microbiome, and gene expression alterations in the colon of newborn piglets with intrauterine growth restriction

Isobaric tags for relative and absolute quantification-based proteomic analysis of host-pathogen protein interactions in the midgut of Aedes albopictus during dengue virus infection

Excessive fructose intake inhibits skeletal development in adolescent rats via gut microbiota and energy metabolism

A decade after the first Pucciniales genomes: A bibliometric snapshot of (post) genomics studies in three model rust fungi

Glutamate as a non-conventional substrate for high production of the recombinant protein in Escherichia coli

Amelioration of dextran sulfate sodium-induced colitis by autoinducer-2-deficient Lactiplantibacillus plantarum is mediated by anti-inflammatory effects and alleviation of dysbiosis of the gut microbiota

Prevalence and diversity of type VI secretion systems in a model beneficial symbiosis

Prevalence and risk factors of carbapenem-resistant Enterobacterales positivity by active screening in intensive care units in the Henan Province of China: A multi-center cross-sectional study

Characterization and spoilage potential of Bacillus cereus isolated from farm environment and raw milk

The effects of fermented pineapple residue on growth performance, meat quality, and rumen microbiota of fattening Simmental bull

Bacterioplankton seasonality in deep high-mountain lakes

Physiological and transcriptomic analyses revealed gene networks involved in heightened resistance against tomato yellow leaf curl virus infection in salicylic acid and jasmonic acid treated tomato plants

Characterizing rhizosphere microbial communities associated with tolerance to aboveground herbivory in wild and domesticated tomatoes

Niche differentiation among comammox (Nitrospira inopinata) and other metabolically distinct nitrifiers

Supplementary benefits of CT-guided transthoracic lung aspiration biopsy for core needle biopsy

Intercellular communication and social behaviors in mycobacteria

Genome mining to unravel potential metabolic pathways linked to gallium bioleaching ability of bacterial mine isolates

Markerless gene deletion in Ralstonia solanacearum based on its natural transformation competence

Dendrobine biosynthesis in Dendrobium nobile in four different habitats is affected by the variations in the endophytic fungal community

Novel lineages of single-stranded DNA phages that coevolved with the symbiotic bacteria Rhizobium

Prevalence and mobility of integrative and conjugative elements within a Streptomyces natural population

Structural and functional alterations of intestinal flora in mice induced by halonitromethanes exposure

Enhancing egg production and quality by the supplementation of probiotic strains (Clostridium and Brevibacillus) via improved amino acid digestibility, intestinal health, immune response, and antioxidant activity

Circadian dysregulation induces alterations of visceral sensitivity and the gut microbiota in Light/Dark phase shift mice

Identification of a novel aminoglycoside O-nucleotidyltransferase AadA33 in Providencia vermicola

Receptor-binding domain-anchored peptides block binding of severe acute respiratory syndrome coronavirus 2 spike proteins with cell surface angiotensin-converting enzyme 2

Ruminal background of predisposed milk urea (MU) concentration in Holsteins

Gut microbe metabolism of small molecules supports human development across the early stages of life

Identification and genetic characterization of mitochondrial citrate transporters in Aspergillus niger

The exploration of anti-Vibrio parahaemolyticus substances from Phellodendri Chinensis Cortex as a preservative for shrimp storage

Microbial containment device: A platform for comprehensive analysis of microbial metabolism without sample preparation

A comprehensive map of microbial biomarkers along the gastrointestinal tract for celiac disease patients

Relationships among microbiota, gastric cancer, and immunotherapy

Determining why continuous cropping reduces the production of the morel Morchella sextelata

No synergistic effect of fecal microbiota transplantation and shugan decoction in water avoidance stress-induced IBS-D rat model

Toll-like receptor 2 signaling pathway activation contributes to a highly efficient inflammatory response in Japanese encephalitis virus-infected mouse microglial cells by proteomics

Epidemiological characteristics and molecular evolution mechanisms of carbapenem-resistant hypervirulent Klebsiella pneumoniae

Differences in microbial diversity and environmental factors in ploughing-treated tobacco soil

Sticky bacteria: Combined effect of galactose and high ferric iron concentration on extracellular polymeric substances production and the attachment of Acidithiobacillus ferrooxidans on a polymetallic sulfide ore surface

Protective effect of Limosilactobacillus fermentum HFY06 on dextran sulfate sodium-induced colitis in mice

Isolation, characterization, and genome sequencing of a novel chitin deacetylase producing Bacillus aryabhattai TCI-16

How to simply and efficiently screen microbial strains capable of anaerobic biosynthesis of biosurfactants: Method establishment, influencing factors and application example evaluation

Microbial-assisted soil chromium immobilization through zinc and iron-enriched rice husk biochar

New formulation of a recombinant anthrax vaccine stabilised with structurally modified plant viruses

High genomic differentiation and limited gene flow indicate recent cryptic speciation within the genus Laspinema (cyanobacteria)

Torquetenovirus in pregnancy: Correlation with vaginal microbiome, metabolome and pro-inflammatory cytokines

Fc receptor-like 5 gene polymorphisms and mRNA expression are associated with liver fibrosis in chronic hepatitis B

The combination of diethyldithiocarbamate and copper ions is active against Staphylococcus aureus and Staphylococcus epidermidis biofilms in vitro and in vivo

Clinical utility of target amplicon sequencing test for rapid diagnosis of drug-resistant Mycobacterium tuberculosis from respiratory specimens

Editorial: Multi-species biofilms in the food industry

Complete genome sequences of two Escherichia coli clinical isolates from Egypt carrying mcr-1 on IncP and IncX4 plasmids

Chicken IgY reduces the risk of Pseudomonas aeruginosa urinary tract infections in a murine model

Impacts of soybean agriculture on the resistome of the Amazonian soil

Effects of simulated acid rain on rhizosphere microorganisms of invasive Alternanthera philoxeroides and native Alternanthera sessilis

A CRISPR/Cas12a-assisted rapid detection platform by biosensing the apxIVA of Actinobacillus pleuropneumoniae

Signal and regulatory mechanisms involved in spore development of Phytophthora and Peronophythora

Molecular diagnosis of bovine genital campylobacteriosis using high-resolution melting analysis

A novel hydrophobin encoded by hgfII from Grifola frondosa exhibiting excellent self-assembly ability

Changes in the genomes and methylomes of three Salmonella enterica serovars after long-term storage in ground black pepper

Variability of murine bacterial pneumonia models used to evaluate antimicrobial agents

Periodontitis induced by orthodontic wire ligature drives oral microflora dysbiosis and aggravates alveolar bone loss in an improved murine model

Unconventional genetic code systems in archaea

Deletion of NGG1 in a recombinant Saccharomyces cerevisiae improved xylose utilization and affected transcription of genes related to amino acid metabolism

Progress in structural and functional study of the bacterial phenylacetic acid catabolic pathway, its role in pathogenicity and antibiotic resistance

Identification of region of difference and H37Rv-related deletion in Mycobacterium tuberculosis complex by structural variant detection and genome assembly

Assessment of the safety and probiotic properties of Roseburia intestinalis: A potential “Next Generation Probiotic”

Long-term humoral immunogenicity, safety and protective efficacy of inactivated vaccine against reindeer rabies

The Gut Bacteria Dysbiosis Contributes to Chronic Graft-Versus-Host Disease Associated With a Treg/Th1 Ratio Imbalance

Genetic variation along an altitudinal gradient in the Phytophthora infestans effector gene Pi02860

Discovery of Rickettsia spp. in mosquitoes collected in Georgia by metagenomics analysis and molecular characterization

Genomic characterization of multidrug-resistance gene cfr in Escherichia coli recovered from food animals in Eastern China

Effects of extracellular polymeric substances on the aggregation of Aphanizomenon flos-aquae under increasing temperature

Role of lactic acid bacteria and yeasts in sourdough fermentation during breadmaking: Evaluation of postbiotic-like components and health benefits

Detection of Escherichia coli, Pseudomonas aeruginosa, Salmonella paratyphoid B, and Shigella dysentery in live Bacillus licheniformis products using propidium monoazide-real-time-quantitative polymerase chain reaction

Exploring the effect of wilting on fermentation profiles and microbial community structure during ensiling and air exposure of king grass silage

The shortcut of mycobacterial interspersed repetitive unit-variable number tandem repeat typing for Mycobacterium tuberculosis differentiation

Changes in the gut microbiota of forest musk deer (Moschus berezovskii) during ex situ conservation

Pesticide thiram exposure alters the gut microbial diversity of chickens

Bio-priming with a consortium of Streptomyces araujoniae strains modulates defense response in chickpea against Fusarium wilt

Arbuscular mycorrhizal fungi and phosphorus supply accelerate main medicinal component production of Polygonum cuspidatum

Expert workshop summary: Advancing toward a standardized murine model to evaluate treatments for antimicrobial resistance lung infections

Microorganisms present in artisanal fermented food from South America

Effects of different additives on the bacterial community and fermentation mode of whole-plant paper mulberry silage

Wheat blast: A review from a genetic and genomic perspective

Antimicrobial resistance of Salmonella Indiana from retail chickens in China and emergence of an mcr-1-harboring isolate with concurrent resistance to ciprofloxacin, cefotaxime, and colistin

A super absorbent polymer containing copper to control Plenodomus tracheiphilus the causative agent of mal secco disease of lemon

Solar park promoted microbial nitrogen and phosphorus cycle potentials but reduced soil prokaryotic diversity and network stability in alpine desert ecosystem

Editorial: Discovery of novel plant-derived compounds with antibacterial actions against antibiotic-resistant bacteria, volume II

Zinc-finger antiviral protein-mediated inhibition of porcine epidemic diarrhea virus growth is antagonized by the coronaviral nucleocapsid protein

Impact of an arbuscular mycorrhizal fungal inoculum and exogenous methyl jasmonate on the performance of tall fescue under saline-alkali condition

Influence of ergosterol and phytosterols on wine alcoholic fermentation with Saccharomyces cerevisiae strains

Human milk microbiome is shaped by breastfeeding practices

Comparative genomic and functional analyses of Paenibacillus peoriae ZBSF16 with biocontrol potential against grapevine diseases, provide insights into its genes related to plant growth-promoting and biocontrol mechanisms

Ratio of carbon and nitrogen in fertilizer treatment drives distinct rhizosphere microbial community composition and co-occurrence networks

Compare the physicochemical and biological properties of engineered polymer-functionalized silver nanoparticles against Porphyromonas gingivalis

Source and acquisition of rhizosphere microbes in Antarctic vascular plants

Antimicrobial activity of bovine lactoferrin against Gardnerella species clinical isolates

Population genomics in neglected malaria parasites

Discovery of two novel Torque Teno viruses in Callithrix penicillata provides insights on Anelloviridae diversification dynamics

Exploring the mechanism of action of Sanzi formula in intervening colorectal adenoma by targeting intestinal flora and intestinal metabolism

nifH gene expression and diversity in geothermal springs of Tengchong, China

Withdrawal of antibiotic growth promoters in China and its impact on the foodborne pathogen Campylobacter coli of swine origin

Characterization of two conserved cell death elicitor families from the Dothideomycete fungal pathogens Dothistroma septosporum and Fulvia fulva (syn. Cladosporium fulvum)

Effect of tea polyphenols on the fermentation quality, protein preservation, antioxidant capacity and bacterial community of stylo silage

Effects of high-altitude hypoxic environment on colonic inflammation, intestinal barrier and gut microbiota in three-way crossbred commercial pigs

Current treatment of chronic hepatitis B: Clinical aspects and future directions

House feeding system improves the estrus rate in yaks (Bos grunniens) by increasing specific fecal microbiota and myo-inositol content in serum

The response of sugar beet rhizosphere micro-ecological environment to continuous cropping

Electron shuttles enhanced the removal of antibiotics and antibiotic resistance genes in anaerobic systems: A review

Impact of preservation method and storage period on ribosomal metabarcoding of marine microbes: Implications for remote automated samplings

The diversity analysis and gene function prediction of intestinal bacteria in three equine species

Factors structuring microbial communities in highly impacted coastal marine sediments (Mar Menor lagoon, SE Spain)

Short-term application of chicken manure under different nitrogen rates alters structure and co-occurrence pattern but not diversity of soil microbial community in wheat field

Long-term fertilization altered microbial community structure in an aeolian sandy soil in northeast China

PMA-qPCR method for the selective quantitation of viable lactic acid bacteria in fermented milk

Susceptibility-guided vs. empirical 10-day quadruple treatment for Helicobacter pylori-infected patients: A prospective clinical trial of first-line therapy

Global trends in intestinal flora and ulcerative colitis research during the past 10 years: A bibliometric analysis

Cultivation of different seaweed species and seasonal changes cause divergence of the microbial community in coastal seawaters

Metagenomic analysis reveals the microbiome and antibiotic resistance genes in indigenous Chinese yellow-feathered chickens

Selective sweep sites and SNP dense regions differentiate Mycobacterium bovis isolates across scales

Metaphenotypes associated with recurrent genomic lineages of Campylobacter jejuni responsible for human infections in Luxembourg

Nitrogen and phosphorus significantly alter growth, nitrogen fixation, anatoxin-a content, and the transcriptome of the bloom-forming cyanobacterium, Dolichospermum

Significant differences in intestinal fungal community of hooded cranes along the wintering periods

Aspergillus-bees: A dynamic symbiotic association

A pseudokinase version of the histidine kinase ChrS promotes high heme tolerance of Corynebacterium glutamicum

Transmission of the gut microbiome in cohousing goats and pigs

Epsilon poly-L-lysine as a novel antifungal agent for sustainable wood protection

Global transcriptional regulator FNR regulates the pyruvate cycle and proton motive force to play a role in aminoglycosides resistance of Edwardsiella tarda

First determination of DNA virus and some additional bacteria from Melophagus ovinus (sheep ked) in Tibet, China

Identification of drivers of mycobacterial resistance to peptidoglycan synthesis inhibitors

Transcriptome sequencing analysis of echovirus 30 infection reveals its potential pathogenesis

Revealing the novel effect of Jinghua Weikang capsule against the antibiotic resistance of Helicobacter pylori

The bacteriocin Angicin interferes with bacterial membrane integrity through interaction with the mannose phosphotransferase system

The efficacy of nisin against Listeria monocytogenes on cold-smoked salmon at natural contamination levels is concentration-dependent and varies by serotype

Comparison of rumen bacterial communities between yaks (Bos grunniens) and Qaidam cattle (Bos taurus) fed a low protein diet with different energy levels

Bifidobacterium lactis combined with Lactobacillus plantarum inhibit glioma growth in mice through modulating PI3K/AKT pathway and gut microbiota

Circular RNA circ_0076631 promotes coxsackievirus B3 infection through modulating viral translation by sponging miR-214-3p

Gut community alterations associated with Clostridioides difficile colonization in hospitalized gastroenterological patients with or without inflammatory bowel disease

Whole-genome assembly and analysis of a medicinal fungus: Inonotus hispidus

Distribution and genetic diversity of multi-drug-resistant Klebsiella pneumoniae at the human–animal–environment interface in Pakistan

Bacterial and fungal communities within and among geographic samples of the hemp pest Psylliodes attenuata from China

Rumen fermentative metabolomic and blood insights into the effect of yeast culture supplement on growing bulls under heat stress conditions

Global prevalence, characteristics, and future prospects of IncX3 plasmids: A review

Biological activity of galacto-oligosaccharides: A review

Microbiome analysis reveals the effects of black soldier fly oil on gut microbiota in pigeon

Potential biocontrol efficiency of Trichoderma species against oomycete pathogens

A new multiplex PCR for the accurate identification and differentiation of Salmonella enterica serovar Gallinarum biovars Pullorum and Gallinarum

Geraniol inhibits biofilm formation of methicillin-resistant Staphylococcus aureus and increase the therapeutic effect of vancomycin in vivo

Editorial: Responses of marine microbes to multiple environmental drivers of global change: The interplay of abiotic and biotic factors

Coordinate regulation of methanol utilization pathway genes of Komagataella phaffii by transcription factors and chromatin modifiers

The peroxins BcPex8, BcPex10, and BcPex12 are required for the development and pathogenicity of Botrytis cinerea

Mechanisms of Zhenwu decoction for the treatment of renal fibrosis at various stages: What is the role of Corynebacterium?

Microbial community composition in the rhizosphere of Pteris vittata and its effects on arsenic phytoremediation under a natural arsenic contamination gradient

Contribution of gut microbiota toward renal function in sepsis

Unraveling the mechanism of sulfur nutrition in pigeonpea inoculated with sulfur-oxidizing bacteria

Development of Cordyceps javanica BE01 with enhanced virulence against Hyphantria cunea using polyethylene glycol-mediated protoplast transformation

Significant compositional and functional variation reveals the patterns of gut microbiota evolution among the widespread Asian honeybee populations

Identification of ophiostomatalean fungi associated with Tomicus pilifer infesting Pinus koraiensis in Northeastern China

Advances in multi-omics research on viral hepatitis

Microbial community structure and shift pattern of industry brine after a long-term static storage in closed tank

Synthetic mimetics assigned a major role to IFNAR2 in type I interferon signaling

Epidemiology, prevalence, and associated factors of oral candidiasis in HIV patients from southwest Iran in post-highly active antiretroviral therapy era

The invasion process of the entomopathogenic fungus Ophiocordyceps sinensis into the larvae of ghost moths (Thitarodes xiaojinensis) using a GFP-labeled strain

Effects of Lactic Acid Bacteria Additives on the Quality, Volatile Chemicals and Microbial Community of Leymus chinensis Silage During Aerobic Exposure

Microbial community structure and niche differentiation under different health statuses of Pinus bungeana in the Xiong'an New Area in China

Biocontrol activity and action mechanism of Bacillus velezensis strain SDTB038 against Fusarium crown and root rot of tomato

Strategies for dispersion of cariogenic biofilms: applications and mechanisms

Metabolomic analysis in spondyloarthritis: A systematic review

Prebiotics enhance persistence of fermented-food associated bacteria in in vitro cultivated fecal microbial communities

Synergistic antibacterial activity of compact silver/magnetite core-shell nanoparticles core shell against Gram-negative foodborne pathogens

The immunity priming effect of the Arabidopsis phyllosphere resident yeast Protomyces arabidopsidicola strain C29

Biogeographic patterns of potential pathogenic bacteria in the middle and lower reaches of the Yangtze River as well as its two adjoining lakes, China

The species-level microbiota of healthy eyes revealed by the integration of metataxonomics with culturomics and genome analysis

The Remote Emerging Disease Intelligence—NETwork

Differences, links, and roles of microbial and stoichiometric factors in microplastic distribution: A case study of five typical rice cropping regions in China

Influence of Bacillus subtilis strain Z-14 on microbial communities of wheat rhizospheric soil infested with Gaeumannomyces graminis var. tritici

Unchanged nitrate and nitrite isotope fractionation during heterotrophic and Fe(II)-mixotrophic denitrification suggest a non-enzymatic link between denitrification and Fe(II) oxidation

Diversity of endophytic bacterial and fungal microbiota associated with the medicinal lichen Usnea longissima at high altitudes

Extension of the shelf-life of fresh pasta using modified atmosphere packaging and bioprotective cultures

Sigma factor RpoS positively affects the spoilage activity of Shewanella baltica and negatively regulates its adhesion effect

MliR, a novel MerR-like regulator of iron homeostasis, impacts metabolism, membrane remodeling, and cell adhesion in the marine Bacteroidetes Bizionia argentinensis

When does hepatitis B virus meet long-stranded noncoding RNAs?

Rhodotorula benthica culture as an alternative to antibiotics improves growth performance by improving nutrients digestibility and intestinal morphology, and modulating gut microbiota of weaned piglets

Characterization of a novel β-agarase from Antarctic macroalgae-associated bacteria metagenomic library and anti-inflammatory activity of the enzymatic hydrolysates

Paecilins F–P, new dimeric chromanones isolated from the endophytic fungus Xylaria curta E10, and structural revision of paecilin A

RNA-sequencing analysis of the Diquat-degrading yeast strain Meyerozyma guilliermondii Wyslmt and the discovery of Diquat degrading genes

Cultivation of gastrointestinal microbiota in a new growth system revealed dysbiosis and metabolic disruptions in carcinoma-bearing rats

Inhibitors targeting the autophosphorylation of serine/threonine kinase of Streptococcus suis show potent antimicrobial activity

Aflatoxin biocontrol effectiveness in the real world—Private sector-led efforts to manage aflatoxins in Nigeria through biocontrol-centered strategies

Responses of soil fungal communities and functional guilds to ~160 years of natural revegetation in the Loess Plateau of China

Hepatitis B virus DNA integration as a novel biomarker of hepatitis B virus-mediated pathogenetic properties and a barrier to the current strategies for hepatitis B virus cure

Detection of a novel Pestivirus strain in Java ticks (Amblyomma javanense) and the hosts Malayan pangolin (Manis javanica) and Chinese pangolin (Manis pentadactyla)

Physicochemical property, bacterial diversity, and volatile profile during ripening of naturally fermented dry mutton sausage produced from Jianzhou big-eared goat

Advancement in the molecular perspective of plant-endophytic interaction to mitigate drought stress in plants

Probabilistic modeling and risk characterization of the chronic aflatoxin M1 exposure of Hungarian consumers

Effect of sex on the gut microbiota characteristics of passerine migratory birds

Microbial and human transcriptional profiling of coronavirus disease 2019 patients: Potential predictors of disease severity

Responses of soil enzyme activities and bacterial community structure to different hydrological regimes during peatland restoration in the Changbai Mountain, northeast China

Comparison of growth performance, non-specific immunity, and intestinal microbiota of olive flounder (Paralichthys olivaceus) fed with extruded pellet and moist pellet diets under field conditions in South Korea

Combined urine metabolomics and 16S rDNA sequencing analyses reveals physiological mechanism underlying decline in natural mating behavior of captive giant pandas

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Insights into the global freshwater virome

Content Provider	frontiers
Author	Elbehery, Ali H. A. Deng, Li
Abstract	Viruses are by far the most abundant life forms on this planet. Yet, the full viral diversity remains mostly unknown, especially in environments like freshwater. Therefore, we aimed to study freshwater viruses in a global context. To this end, we downloaded 380 publicly available viral metagenomes (>1 TB). More than 60% of these metagenomes were discarded based on their levels of cellular contamination assessed by ribosomal DNA content. For the remaining metagenomes, assembled contigs were decontaminated using two consecutive steps, eventually yielding 273,365 viral contigs longer than 1000 bp. Long enough contigs (≥ 10 kb) were clustered to identify novel genomes/genome fragments. We could recover 549 complete circular and high-quality draft genomes, out of which 10 were recognized as being novel. Functional annotation of these genomes showed that most of the annotated coding sequences are DNA metabolic genes or phage structural genes. On the other hand, taxonomic analysis of viral contigs showed that most of the assigned contigs belonged to the order Caudovirales, particularly the families of Siphoviridae, Myoviridae and Podoviridae. The recovered viral contigs contained several auxiliary metabolic genes belonging to several metabolic pathways, especially carbohydrate and amino acid metabolism in addition to photosynthesis as well as hydrocarbon degradation and antibiotic resistance. Overall, we present here a set of prudently chosen viral contigs, which should not only help better understanding of freshwater viruses but also be a valuable resource for future virome studies.
ISSN	1664302X
DOI	10.3389/fmicb.2022.953500
Volume Number	13
Journal	Frontiers in Microbiology
Language	English
Publisher Date	2022-09-28
Access Restriction	Open
Subject Keyword	Virome Auxiliary metabolic genes Freshwater Bacteriophages Metagenome
Content Type	Text
Resource Type	Article
Subject	Microbiology Microbiology (medical)

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