NDLI: Complete chloroplast genome sequence of <i>Semiliquidambar cathayensis</i> (hamamelidaceae), a rare and endangered species endemic to China.

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Complete chloroplast genome sequence of Semiliquidambar cathayensis (hamamelidaceae), a rare and endangered species endemic to China.

Content Provider	Europe PMC
Author	Shi, Yancai Duan, Na Liu, Bingbing
Copyright Year	2019
Abstract	AbstractSemiliquidambar cathayensis (Hamamelidaceae) is a rare and endangered species endemic to China. Here, we first report and characterize the complete chloroplast genome sequence of S. cathayensis based on Illumina paired-end sequencing data. The complete plastid genome was 160,406 bp in length, which contained two inverted repeats (IRs) of 26,282 bp separated by a large single-copy (LSC) and a small single copy (SSC) of 88,920 bp and 18,922 bp, respectively. The cpDNA contains 132 genes, comprising 86 protein-coding genes, 37 tRNA genes, 8 rRNA genes and one processed pseudogene. The overall GC content of the plastome is 37.9%. The phylogenetic analysis of 20 selected chloroplast genomes demonstrated that S. cathayensis was close to the species Liquidambar formosana.
Page Count	2
Volume Number	4
PubMed Central reference number	PMC7707359
Issue Number	2
PubMed reference number	33365942
Journal	Mitochondrial DNA. Part B, Resources [Mitochondrial DNA B Resour]
e-ISSN	23802359
DOI	10.1080/23802359.2019.1670114
Language	English
Publisher	Taylor & Francis
Publisher Date	2019-09-25
Access Restriction	Open
Rights License	This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. © 2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.
Subject Keyword	Semiliquidambar chloroplast genome phylogenetic analysis
Content Type	Text
Resource Type	Article
Subject	Genetics Molecular Biology

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