NDLI: Invited ( RECOMB '03 )

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Efficient extraction of mapping rules of atoms from enzymatic reaction data

On de novo interpretation of tandem mass spectra for peptide identification

Haplotypes and informative SNP selection algorithms: don't block out information

Modeling dependencies in protein-DNA binding sites

Efficient exact value computation and applications to biosequence analysis

Towards optimally multiplexed applications of universal DNA tag systems

A comparative analysis method for detecting binding sites in coding regions

Designing seeds for similarity search in genomic DNA

Maximum likelihood on four taxa phylogenetic trees: analytic solutions

Phylogenetically and spatially conserved word pairs associated with gene expression changes in yeasts

Haplotype phase inference

An integrated probabilistic model for functional prediction of proteins

Large scale reconstruction of haplotypes from genotype data

Optimizing exact genetic linkage computations

Combinatorial synthesis on macroscopic solid support units

Finding recurrent sources in sequences

Model-based inference of haplotype block variation

Computational analysis of the human and other mammalian genomes

Accurate detection of very sparse sequence motifs

Engineering a scalable placement heuristic for DNA probe arrays

Whole-genome comparative annotation and regulatory motif discovery in multiple yeast species

Joint classifier and feature optimization for cancer diagnosis using gene expression data

Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments

A complete and effective move set for simplified protein folding

Invited: Prediction of protein function

Efficient rule-based haplotyping algorithms for pedigree data

Haplotype reconstruction from SNP alignment

Gene selection criterion for discriminant microarray data analysis based on extreme value distributions

A multi-expert system for the automatic detection of protein domains from sequence information

Invited: Biology and bioinformatics of halophilism

Resolution of haplotypes and haplotype frequencies from SNP genotypes of pooled samples

Transforming men into mice: the Nadeau-Taylor chromosomal breakage model revisited

Scoring two-species local alignments to try to statistically separate neutrally evolving from selected DNA segments

Approximation of protein structure for fast similarity measures

Combining phylogenetic and hidden Markov models in biosequence analysis

Invited: low-level analyses of microarray data

Using a mixture of probabilistic decision trees for direct prediction of protein function

Modeling transcription programs: inferring binding site activity and dose-response model optimization

Invited: poetry and prose of the sequences

Physical network models and multi-source data integration

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals

Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data

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Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
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