NDLI: Planteome annotation wiki: a semantic application for the community curation of plant genotypes and phenotypes

Please wait, while we are loading the content...

Applying ontologies and exploring nanopublishing in a genome-wide association study database

Supporting nanopublication provenance: PMID2DOI converter

Genome design with the semantic web

Translating standards into practice: one semantic web API for gene expression

Towards decentralized and cooperative repositories of distributed ontologies

Programming biomedical smart space applications with BioImageXD and PythonRules

OPPL-Galaxy: enhancing ontology exploitation in galaxy with OPPL

A translational model for representing research articles

Tagsty: augmented knowledge from community-based annotations on protein sequences

Bioqueries: a social community sharing experiences while querying biological linked data

LinkData.org supports Japan's LOD challenge

Systematic identification and correction of spelling errors in the foundational model of anatomy

Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments

Using semantic web technology to support ICD-11 textual definitions authoring

LogMap 2.0: towards logic-based, scalable and interactive ontology matching

BioSPARQL: ontology-based smart building of SPARQL queries for biological linked open data

Adding text mining workflows as web services to the BioCatalogue

Debugging is-a structure in networked taxonomies

COEUS: a semantic web application framework

Chemical knowledge representation with description graphs and logic programming

Inspecting regularities and irregularities in SNOMED-CT

Semantics-aware open information extraction in the biomedical domain

BioLOD.org: ontology-based integration of biological linked open data

The linked clinical data project: applying semantic web technologies for clinical and translational research using electronic medical records

Planteome annotation wiki: a semantic application for the community curation of plant genotypes and phenotypes

Exploiting text-rich descriptions for faceted discovery of web resources

Towards clinical intelligence with SADI semantic web services: a case study with hospital-acquired infections data

CLI-mate: an interface generator for command line programs

The SADI plug-in to IO informatics' sentient knowledge explorer

DOG4DAG: semi-automated ontology generation in OBO-Edit and Protégé

Building linked open data using approximate string matching methods and domain specific resources

A semantic multi-agent system for intelligent and adaptive scientific workflows

Planteome annotation wiki: a semantic application for the community curation of plant genotypes and phenotypes

Content Provider	ACM Digital Library
Author	Preece, Justin Jaiswal, Pankaj Elser, Justin
Abstract	Two notable trends currently impacting biology curation are 1) the use of wikis to input, store, and disseminate research data and 2) the development of semantic technologies to facilitate higher-order data description and exploration. These separate developments, when brought together, have the potential to deliver on one promise of the "semantic web": structured, self-described data used to further scientific research and analysis. The Semantic MediaWiki [5] extension, when used in conjunction with Semantic Forms [4], provides an avenue to create a semantically-driven, community-powered research platform on the web. The Planteome Annotation Wiki implements these technology platforms to provide a user interface for annotation, personal user accounts, a set of previously-curated annotations (i.e. from TAIR [6], Gramene [7], and the Plant Ontology Consortium [3]) and a rigorous semantic data structure. The wiki also dynamically integrates data from other sites via web services. For example, Gene Ontology [2] and Plant Ontology terms, PubMed references and taxonomic data are all available. An import utility accepting large-scale GO Annotation File Format (GAF [1]) data has also been developed, and the wiki provides multi-format import, export, and semantic browsing and search capabilities. Future enhancements include an exploration of semantic inferencing capabilities using ontologies, a curatorial approval mechanism, and further data integration with other biowikis.
Starting Page	96
Ending Page	97
Page Count	2
File Format	PDF
ISBN	9781450310765
DOI	10.1145/2166896.2166921
Language	English
Publisher	Association for Computing Machinery (ACM)
Publisher Date	2011-12-07
Publisher Place	New York
Access Restriction	Subscribed
Content Type	Text
Resource Type	Article

Central Library (ISO-9001:2015 Certified)
Indian Institute of Technology Kharagpur
Kharagpur, West Bengal, India | PIN - 721302

See location in the Map
03222 282435
Mail: support@ndl.gov.in

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in