NDLI: A general method to assess similarity of protein structures, with applications to T4 bacteriophage lysozyme.

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A general method to assess similarity of protein structures, with applications to T4 bacteriophage lysozyme.

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A general method to assess similarity of protein structures, with applications to T4 bacteriophage lysozyme.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Matthews, B. W. Remington, S. J.
Abstract	A method is proposed that permits the structural similarity between any pair of proteins to be analyzed in a completely general manner. In the proposed procedure, all possible structural segments of a given length from one protein are compared with all possible segments from the other protein. This set of comparisons reveals any structural similarities between the two proteins being compared, and also provides a basis for estimating the probability that a particular degree of structural homology could have occurred by chance. Application of the method to the comparison of T4 bacteriophage lysozyme and carp calcium-binding protein suggests that the previously reported structural similarity between parts of these two proteins [Tufty, R. M.& Kretsinger, R. H. (1975) Science 187, 167-169] is no better than would be expected by chance. On the other hand, the structural correspondence between phage lysozyme and hen egg-white lysozyme [Rossman, M.G. & Argos, P. (1976) J. Mol. Biol. 105, 75-96] does appear to be significant.
ISSN	00278424
e-ISSN	10916490
Journal	Proceedings of the National Academy of Sciences of the United States of America
Issue Number	5
Volume Number	75
Language	English
Publisher	National Academy of Sciences
Publisher Date	1978-09-01
Publisher Place	United States
Access Restriction	Open
Subject Keyword	Muramidase Protein Conformation Animals Calcium Carrier Proteins Coliphages Enzymology Hemoglobins Models, Biological Myoglobin Ovalbumin Metabolism Comparative Study Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S. Multidisciplinary
Content Type	Text
Resource Type	Article
Subject	Multidisciplinary

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