NDLI: Molecular Cloning, Mapping, and Polymorphism of the Porcine SCG2 gene

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Molecular Cloning, Mapping, and Polymorphism of the Porcine SCG2 gene

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Molecular Cloning, Mapping, and Polymorphism of the Porcine SCG2 gene

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Du, Hong-Li Chen, Jing Zhang, Yu-Shan Zhang, Xi-Quan
Description	Author Affiliation: Du HL ( School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510640, P.R. China.)
Abstract	The secretogranin II (SCG2) gene is associated with the synthesis and secretion of follicle-stimulating hormone and luteinizing hormone. In the present study, we have determined the complete cDNA sequence of pig SCG2, which was submitted to GenBank with accession no. AY870646. Its complete open reading frame of 1,851 nucleotides encodes 616 amino acids. The predicted protein shares 80–87% identity with mouse, human, and bovine SCG2 proteins, and all four species share almost complete identity in the secretoneurin and EM66 domains. Pig SCG2 is a protein of 589 amino acids and 68,132 Da, preceded by a signal peptide of 27 residues. It contains nine pairs of dibasic residues, which are used as potential cleavage sites for generation of physiologically active peptides. Analysis of the SCG2 gene across the INRA-Minnesota porcine radiation hybrid panel indicates close linkage with microsatellite marker SW2608, located on Sus scrofa chromosome 15 (SSC15) q25, which harbors several QTL for ovulation rate and meat quality. Comparative sequencing and EST analysis revealed nine SNPs in porcine SCG2 cDNA, including seven SNPs in the coding region and two SNPs in the 3′ UTR. Four nonsynonymous SNPs (G622A, G1671T, C1718T, and A1790C) resulted in amino acid substitutions of Ala→Thr, Glu→Asp, Pro→Leu, and Asn→Thr, respectively.
File Format	HTM / HTML
ISSN	00062928
Issue Number	5-6
Volume Number	46
e-ISSN	15734927
Journal	Biochemical Genetics
Language	English
Publisher	Springer
Publisher Date	2008-06-01
Publisher Place	United States
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Discipline Molecular Biology Polymorphism, Genetic Secretogranin Ii Genetics Sus Scrofa Amino Acid Sequence Animals Base Sequence Chromosomes, Mammalian Cloning, Molecular Female Molecular Sequence Data Polymorphism, Single Nucleotide Sequence Alignment Journal Article Research Support, Non-u.s. Gov't
Content Type	Text
Resource Type	Article
Subject	Genetics Medicine Biochemistry Molecular Biology Ecology, Evolution, Behavior and Systematics

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Molecular Cloning, Mapping, and Polymorphism of the Porcine SCG2 gene

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Molecular Cloning, Mapping, and Polymorphism of the Porcine SCG2 gene

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Molecular Cloning, Mapping, and Polymorphism of the Porcine SCG2 gene