NDLI: Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics.

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Genetic dissection of the resistance to Rice stripe virus present in the indica rice cultivar 'IR24'.

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics.

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Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics.

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Kuang, Dai-Yong Wu, Hong Wang, Ya-Ling Gao, Lian-Ming Zhang, Shou-Zhou Lu, Lu
Description	Author Affiliation: Kuang DY ( Shenzhen Fairy Lake Botanical Garden, Guangdong, P.R. China.)
Abstract	Here, we report a completely sequenced plastome using Illumina/Solexa sequencing-by-synthesis (SBS) technology. The plastome of Magnolia kwangsiensis Figlar & Noot. is 159 667 bp in length with a typical quadripartite structure: 88 030 bp large single-copy (LSC) and 18 669 bp small single-copy (SSC) regions, separated by two 26 484 bp inverted repeat (IR) regions. The overall predicted gene number is 129, among which 17 genes are duplicated in IR regions. The plastome of M. kwangsiensis is identical in its gene order to previously published plastomes of magnoliids. Furthermore, the C-to-U type RNA editing frequency of 114 seed plants is positively correlated with plastome GC content and plastome length, whereas plastome length is not correlated with GC content. A total of 16 potential putative barcoding or low taxonomic level phylogenetic study markers in Magnoliaceae were detected by comparing the coding and noncoding regions of the plastome of M. kwangsiensis with that of Liriodendron tulipifera L. At least eight markers might be applied not only to Magnoliaceae but also to other taxa. The 86 mononucleotide cpSSRs that distributed in single-copy noncoding regions are highly valuable to study population genetics and conservation genetics of this endangered rare species.
File Format	HTM / HTML
ISSN	08312796
e-ISSN	14803321
Journal	Genome
Issue Number	8
Volume Number	54
Language	English
Publisher	Canadian Science Publishing
Publisher Date	2011-08-01
Publisher Place	Canada
Access Restriction	Open
Subject Keyword	Discipline Genetics Chloroplasts Genetics Dna Barcoding, Taxonomic Dna, Chloroplast Genes, Plant Genome, Chloroplast Genome, Plant Magnolia Base Composition Endangered Species Evolution, Molecular Gene Dosage Genetics, Population High-throughput Nucleotide Sequencing Open Reading Frames Phylogeny Repetitive Sequences, Nucleic Acid Research Support, Non-u.s. Gov't
Content Type	Text
Resource Type	Article
Subject	Genetics Medicine Molecular Biology Biotechnology

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