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| Content Provider | World Health Organization (WHO)-Global Index Medicus |
|---|---|
| Author | Lin, Bang Zhong Sasazaki, Shinji Mannen, Hideyuki |
| Description | Country affiliation: Japan Author Affiliation: Lin BZ ( Laboratory of Animal Breeding and Genetics, Graduate School of Agricultural Science, Kobe University, Nada, Kobe, Japan.) |
| Abstract | The purpose of this study was to assess genetic diversity, phylogenetic relationship and population structure among nine Eurasian cattle populations using 58 single nucleotide polymorphism (SNP) markers. The calculated distribution of minor allele frequencies and heterozygosities suggested that the genetic diversity of Bos indicus populations was lower than that of Bos taurus populations. Phylogenetic analyses revealed the main divergence between the Bos taurus and Bos indicus populations, and subsequently between Asian and European populations. By principal components analysis, the Bos taurus and Bos indicus populations were clearly distinguished with PC1 (61.1%); however, six Bos taurus populations clustered loosely and the partial separation between European and Asian groups was observed by PC2 (12.5%). The structure analysis was performed using the STRUCTURE program. Distinct separation between Bos taurus and Bos indicus was shown at K = 2, and that between European and Asian populations at K = 3. At K = 4, 5 and 6, Mongolian population showed an admixture pattern with different ancestry of Asian and European cattle. At K = 7, all Bos taurus populations showed each cluster with little proportion of admixture. In conclusion, 58 SNP markers in this study could sufficiently estimate the genetic diversity, relationship and structure for nine Eurasian cattle populations, especially by analyses of principal components and STRUCTURE. |
| File Format | HTM / HTML |
| ISSN | 13443941 |
| Issue Number | 3 |
| Journal | Animal Science Journal |
| Volume Number | 81 |
| e-ISSN | 17400929 |
| Language | English |
| Publisher | Wiley |
| Publisher Date | 2010-06-01 |
| Publisher Place | Australia |
| Access Restriction | One Nation One Subscription (ONOS) |
| Subject Keyword | Discipline Veterinary Medicine Cattle Genetics Genetic Variation Animals Genetics, Population Phylogeny Polymorphism, Single Nucleotide Journal Article |
| Content Type | Text |
| Resource Type | Article |
| Subject | Medicine Agricultural and Biological Sciences |
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