NDLI: Application of highly differentiated SNPs between Japanese Black and Holstein to a breed assignment test between Japanese Black and $F_{1}$ (Japanese Black x Holstein) and Holstein

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Application of highly differentiated SNPs between Japanese Black and Holstein to a breed assignment test between Japanese Black and $F_{1}$ (Japanese Black x Holstein) and Holstein

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Application of highly differentiated SNPs between Japanese Black and Holstein to a breed assignment test between Japanese Black and $F_{1}$ (Japanese Black x Holstein) and Holstein

Content Provider	World Health Organization (WHO)-Global Index Medicus
Author	Nishimura, Shota Watanabe, Toshio Ogino, Atsushi Shimizu, Kazuhiro Morita, Mitsuo Sugimoto, Yoshikazu Takasuga, Akiko
Description	Country affiliation: Japan Author Affiliation: Nishimura S ( Shirakawa Institute of Animal Genetics, Japan Livestock Technology Association, Nishigo, Fukushima, Japan.)
Abstract	Two taurine breeds, Japanese Black and Holstein, established from geographically distant origins and selected for different uses, beef and dairy, were extensively genotyped using a genome-wide single nucleotide polymorphism (SNP) chip with more than 1000 animals of each breed. The genetic structure was examined by principal component analysis, in which the first principal component clearly separated the two breeds and explained more than 15% of the variance. Highly differentiated SNPs were detected throughout the genome, some of which were clustered within small regions on BTA4 (79.2–79.7 Mb, Btau4.0) and BTA26 (22.2–23.6 Mb). A breed assignment test was developed using 18 highly differentiated SNPs to distinguish Japanese Black from $F_{1}$ (Japanese Black × Holstein) and Holstein. The error rate that an $F_{1}$ or Holstein animal is misjudged as Japanese Black was expected to be < 0.8%, while the error rate that a Japanese Black animal is misjudged as $F_{1}$ or Holstein was expected to be < 0.001%. This test provides a reliable and powerful method to detect breed label falsification in retail beef.
File Format	HTM / HTML
ISSN	13443941
Issue Number	1
Volume Number	84
e-ISSN	17400929
Journal	Animal Science Journal
Language	English
Publisher	Wiley
Publisher Date	2013-01-01
Publisher Place	Australia
Access Restriction	One Nation One Subscription (ONOS)
Subject Keyword	Discipline Veterinary Medicine Breeding Cattle Genetics Genome-wide Association Study Methods Genome Polymorphism, Single Nucleotide Animals Dna Food Inspection Food Labeling Genotyping Techniques Meat Multigene Family Journal Article Research Support, Non-u.s. Gov't
Content Type	Text
Resource Type	Article
Subject	Medicine Agricultural and Biological Sciences

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