NDLI: Distinct hybridization modes in wide- and narrow-ranged lineages of Causonis (Vitaceae)

Content Provider	Springer Nature : BioMed Central
Author	Yu, Jinren Zhao, Hong Niu, Yanting You, Yichen Barrett, Russell L. Ranaivoson, Rindra Manasoa Rabarijaona, Romer Narindra Parmar, Gaurav Yuan, Langxing Jin, Xiaofeng Li, Pan Li, Jianhua Wen, Jun Chen, Zhiduan Lu, Limin
Abstract	Background Explaining contrasting patterns of distribution between related species is crucial for understanding the dynamics of biodiversity. Despite instances where hybridization and whole genome duplication (WGD) can yield detrimental outcomes, a role in facilitating the expansion of distribution range has been proposed. The Vitaceae genus Causonis exhibits great variations in species’ distribution ranges, with most species in the derived lineages having a much wider range than those in the early-diverged lineages. Hybridization and WGD events have been suggested to occur in Causonis based on evidence of phylogenetic discordance. The genus, therefore, provides us with an opportunity to for explore different hybridization and polyploidization modes in lineages with contrasting species’ distribution ranges. However, the evolutionary history of Causonis incorporating potential hybridization and WGD events remains to be explored. Results With plastid and nuclear data from dense sampling, this study resolved the phylogenetic relationships within Causonis and revealed significant cyto-nuclear discordance. Nuclear gene tree conflicts were detected across the genus, especially in the japonica-corniculata clade, which were mainly attributed to gene flow. This study also inferred the allopolyploid origin of the core Causonis species, which promoted the accumulation of stress-related genes. Causonis was estimated to have originated in continental Asia in the early Eocene, and experienced glaciation in the early Oligocene, shortly after the divergence of the early-divergent lineages. The japonica-corniculata clade mainly diversified in the Miocene, followed by temperature declines that may have facilitated secondary contact. Species distribution modeling based on current climate change predicted that the widespread C. japonica tends to be more invasive, while the endemic C. ciliifera may be at risk of extinction. Conclusions This study presents Causonis, a genus with complex reticulate evolutionary history, as a model of how hybridization and WGD modes differ in lineages of contrasting species’ geographic ranges. It is important to consider specific evolutionary histories and genetic properties of the focal species within conservation strategies.
Related Links	https://bmcbiol.biomedcentral.com/counter/pdf/10.1186/s12915-023-01718-8.pdf
Ending Page	21
Page Count	21
Starting Page	1
File Format	HTM / HTML
ISSN	17417007
DOI	10.1186/s12915-023-01718-8
Journal	BMC Biology
Issue Number	1
Volume Number	21
Language	English
Publisher	BioMed Central
Publisher Date	2023-10-09
Access Restriction	Open
Subject Keyword	Life Sciences Causonis Distribution range Hybridization Whole genome duplication Allopolyploidization Reticulate evolution
Content Type	Text
Resource Type	Article
Subject	Ecology, Evolution, Behavior and Systematics Structural Biology Biochemistry, Genetics and Molecular Biology Plant Science Biotechnology Physiology Agricultural and Biological Sciences Cell Biology Developmental Biology
Journal Impact Factor	4.4/2023
5-Year Journal Impact Factor	5.4/2023

Sl.	Authority	Responsibilities	Communication Details
1	Ministry of Education (GoI), Department of Higher Education	Sanctioning Authority	https://www.education.gov.in/ict-initiatives
2	Indian Institute of Technology Kharagpur	Host Institute of the Project: The host institute of the project is responsible for providing infrastructure support and hosting the project	https://www.iitkgp.ac.in
3	National Digital Library of India Office, Indian Institute of Technology Kharagpur	The administrative and infrastructural headquarters of the project	Dr. B. Sutradhar bsutra@ndl.gov.in
4	Project PI / Joint PI	Principal Investigator and Joint Principal Investigators of the project	Dr. B. Sutradhar bsutra@ndl.gov.in Prof. Saswat Chakrabarti will be added soon
5	Website/Portal (Helpdesk)	Queries regarding NDLI and its services	support@ndl.gov.in
6	Contents and Copyright Issues	Queries related to content curation and copyright issues	content@ndl.gov.in
7	National Digital Library of India Club (NDLI Club)	Queries related to NDLI Club formation, support, user awareness program, seminar/symposium, collaboration, social media, promotion, and outreach	clubsupport@ndl.gov.in
8	Digital Preservation Centre (DPC)	Assistance with digitizing and archiving copyright-free printed books	dpc@ndl.gov.in
9	IDR Setup or Support	Queries related to establishment and support of Institutional Digital Repository (IDR) and IDR workshops	idr@ndl.gov.in

Hybridization and the origin of new yeast lineages

Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe

Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution

Polyploidy in fungi: evolution after whole-genome duplication

Data from: Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus) (Dataset)

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

How the vertebrates were made: selective pruning of a double-duplicated genome

2R and remodeling of vertebrate signal transduction engine

The Transcriptional and Splicing Changes Caused by Hybridization Can Be Globally Recovered by Genome Doubling during Allopolyploidization

Distinct hybridization modes in wide- and narrow-ranged lineages of Causonis (Vitaceae)

Similar Documents

Hybridization and the origin of new yeast lineages

Linked by Ancestral Bonds: Multiple Whole-Genome Duplications and Reticulate Evolution in a Brassicaceae Tribe

Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution

Polyploidy in fungi: evolution after whole-genome duplication

Data from: Divergent subgenome evolution after allopolyploidization in African clawed frogs (Xenopus) (Dataset)

The house spider genome reveals an ancient whole-genome duplication during arachnid evolution

How the vertebrates were made: selective pruning of a double-duplicated genome

2R and remodeling of vertebrate signal transduction engine

The Transcriptional and Splicing Changes Caused by Hybridization Can Be Globally Recovered by Genome Doubling during Allopolyploidization

Distinct hybridization modes in wide- and narrow-ranged lineages of Causonis (Vitaceae)